YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109463647
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTMLKFCG QRICEPDAFI VDVRLWFLYN SLLSSDEQTV YIESMAKNNV TTVTEFILMG  60
   61 FNDHPNWEIP LFLVFLSLYL VTILGNLGMV ILIHIDVQLH IPMYFFLSHL SVLDTCYTSV 120
  121 ITPQWSLVVG AYLCGVSGAI LRTTCTFSLS FCENNQINFF FCDLPPLLKL ACSDTANVEI 180
  181 IIVFFGNFVI LANALVILIS YLLIIKAVMK MKSSGRRAKT FSTCVSHLTA VALLFGTLIF 240
  241 MYIRSGSKKS LEEDKVVSVF YTIVIPMLNP LIYSLRNKDV KSAFKKVIGK KIYECGELCI 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	70	0.79
Transmembrane Helix	71	95	0.87
Non-Cytoplasmic	96	100	0.62
Transmembrane Helix	101	121	0.68
Cytoplasmic	122	127	0.51
Transmembrane Helix	128	151	0.63
Non-Cytoplasmic	152	180	0.90
Transmembrane Helix	181	205	0.88
Cytoplasmic	206	222	0.88
Transmembrane Helix	223	243	0.94
Non-Cytoplasmic	244	256	0.91
Transmembrane Helix	257	275	0.58
Cytoplasmic	276	300	0.59