YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109462802
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKKGHRTV WKNGVWLESA ERQGDRAGRL GRRQRGPGSP PASPAAATQV VSALARRPKR  60
   61 RWVHAALQKP EPVRATVPAL QQKTEAKHTQ APRQKVLVTG GGGYLGFSLG SSLAKKGASV 120
  121 ILLDLRRPQW PLPSGTEFIQ LQKREIESIN VGGTKLVINV CVRRRVPRLV YTSTVNVTFG 180
  181 GKPIEQGNED SIPYFPLDKH MDHYSRTKAI ADQLILMANG TPLLGGGTLR TCVLRPPGIY 240
  241 GPEEQKHLPR VASHIKKRLF MFRFGDRRTH MNWVHVQNLV QAHMRAAEGL TLAKGYVASG 300
  301 QAYYIHDGES VNLFEWMAPL FEKLGYSQPW IQVPTSCVYL TAAVMEFLHL ALRPICTISP 360
  361 LLTRSEVLSM TVTHTFQIAK ARAQLGYAPD KFSFADAVER YVQATTPQPC CCTVLTLLRL 420
  421 LLLLLLLLGL LGLALYFLGL QPLQAVVERL

Type	Start	End	Confidence
Non-Cytoplasmic	1	416	0.70
Transmembrane Helix	417	440	0.86
Cytoplasmic	441	450	0.46