YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169234822, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSTVQRVA LASGLVLAVS LLLPKAFLSR GKRPEPPPGP EGKLGRFPPM MHHHTAPSDG  60
   61 QTPGAHFQRS HLAEAFAKAK GAGGGAGGGG SGRGLMGQII PIYGFGIFLY ILYILFKLSK 120
  121 GKTAEDRNCS TAPPGNTHRK ITNFELVQLQ EKLKETEEAM EKLINRVGPN GESRAQTVTS 180
  181 DQEKRLLHQL REITRVMKEG KFIDTSPEKE AEEAPYMEDW EGYPEETYPI YDLSDGIKRR 240
  241 QETILVDYPD PKEPSAEETA EQMGALDEES SEHLSWDRLP TDPGVQRDNS VTLCDPKPES 300
  301 CSCCFHEDED PAVLAENAGF SADGYSEQEE ATKENLPQDF TDEGLGTSTD NTHVGGMLRK 360
  361 RSPQGFE

Type	Start	End	Confidence
Signal Peptide	1	28	0.83
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	367	0.78