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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109461954, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARAPRLCL LLSCFCLLRV EPAAELEFKP SALTWKAGEE LQQEPAPEPS HSYQMPFAVE  60
   61 DVTTAMEGQD AEAFDAPAMS SWERRLHRAK CAPSYLFSCF NGGECVHPAL CDCRRFNATG 120
  121 PRCQLVYNAG PERDSICRAW GQHHVETFDG LYYYFSGKGS YMLVGHHEPE GQSFSIQVHN 180
  181 DPQCGPAHYT CPRSVSLFLS GEREICLAKE VTHGGIRIQL PQVVAGVQLQ QLAGYVIARY 240
  241 PSAFTLAWDG ASAVYIKMSP EFVGWTHGLC GNNNADPQDD LVTSYGKLTD DIGEFVHSWQ 300
  301 EQVPNSPPVP VMSSLPRPPC LQQSPASMQG VYERCEVLLR SPFDACHAYV SPLPFTASCT 360
  361 SDLCQSGGDE ATWCRALTEY ARACAQAGRP LQGWRTQLSQ CTVRCKEKIF IYNECIACCP 420
  421 ASCQSHASCV DSEIACVDGC YCPNGLIFED GVCMSPAECP CEFHGTLHPP GSVVTEDCNT 480
  481 CTCTAGKWVC SSSVCPAECS VTGDIHFTTF DGRRYTFPAT CQYILAKSRS SGTFTVTLQN 540
  541 APCGLNQDGA CVQSVSVILH QDPRRQVTLT QAGDVLLFDQ YKITPPYSDD AFEIQKLSSV 600
  601 FLRVRTNVGV RILYDREGLR LYLQVDQRWV EDTVGLCGTF NGNTQDDFLS PVGVPESTPQ 660
  661 LFGNSWKTLS ACVPLAPGSL LDPCDVHLQA ASYALQACSV LTGELFAPCS AYLSPIPYFE 720
  721 QCRRDACRCG QPCLCATLAH YARLCRRHGL PVDFRARLPA CALSCEATKE YSPCVALCTQ 780
  781 TCQDLASPDV CGANGGGNFS RDECVEGCTC PPDTFLDTQT DLCVPRNQCS CHFQGVDYPP 840
  841 GDSDIPSLGH CHCKDGVMSC DSRAPAATCP AGQVFVNCSE LHPDPELSRE RTCEQQLLNL 900
  901 SLPARGPCLS GCACPLGLLR HGDSCFPPEE CPCTWKGKEY FPGDQVVSSC HTCVCQRGSF 960
  961 QCTLHPCAST CTAYGDRHYR TFDGLPFDFV GACKVHLVKS TSELSFSVMV EDVNCYSAGV1020
 1021 ICRKSISINV GSSLIIFDDD SGDPSPESFL DEKQAVHIWR AGFFTLVHFP REHITLLWDQ1080
 1081 RTTVHVQAGP QWQGQLVGLC GNFDLKTVNE MRTPENLELT NPQEFGSSWA AVECPDTPDP1140
 1141 RDTCVLNPLR EPFARKECGI LLSEVFETCH PVVDVTWFYS NCLTDTCGCS RGGDCECFCA1200
 1201 SVAAYAHQCC QHGVVIDWRT PRICPYDCDF FNKALGKGPY QLSSVMAGSA LVAMRAVDGD1260
 1261 IALVRAEDLV PGDISSFLLT AALSKAKAHD PDVVSLEAAD RPNFYLHVTA NGSIRLAKWR1320
 1321 RDEAFHQHAS FSLHRGTWQA GLVALESLAK PGSFLQSSGL KLALRTYEHT EAFRGGALFR1380
 1381 LLDAKPSGAA YPICEWHYDA CASPCFQTCR DPQAASCQDV PRVEGCVPVC PTPKVLDEVT1440
 1441 QRCVYLEDCV EPALRGPKET LGNETLAPGQ VLPTTSDKQQ LPQEPPGAST HIPVLDPLAP1500
 1501 LTSAPNPPMA ATEGPVASPG STQPTLQTSL GLTTSNLPAG HTEATAREEG AASLLATSPP1560
 1561 PGSSSSLPSS LQTPTSGILS STTETTKVTL TFAGSPNTTV TSRSPPVPRF PLMTKAVTVP1620
 1621 SHDSFPVKTT PLRPSWSLSS RPTTSPGVTS WPPTSLGSHL STVVTNVTNK TETSLSVLAQ1680
 1681 STKSSSQPLS TAYRAPASPL VTKGLEGASA TEKGDAGHSQ LTELPVSPPP SSAPIDLPHP1740
 1741 AQHTTTAPGS PALSPGILGA GSPSTGAHGL GTTALASLET TRPPHLLSGL PPDTSLPLAK1800
 1801 VGTSAPVATP ASKGYVPTPP PQHWATTSAT AMTVTPLTQT TLSLTAPLMS AVEEQAHSPS1860
 1861 PTAPHITAMT PSFGASAGTA GVPPMVSVAP QKSTTQRAAI LSKKVSPPTL ISDSVQGGFT1920
 1921 ELTPTVSHTV APLVTEAEGP QAGTVPLVPT THSLSRVSAR TASREGPLVL LPQLAEAHGT1980
 1981 PAGLQPQEDL VRQATTEQTG RSAPAQSIAE GSMEAEGNTS AICVPIAEQD CVRHICLEGQ2040
 2041 LIRVNQTQHC PQGAVRPRCG VLGLAVRVGG DHCCPLWECA CRCSIFPDLS FVTFDGSHAA2100
 2101 LFKEAIYILS QSPDEIISVH ALDCKSANLG HLNWPPFCLV ILNVTHLTHH ISIDRFNRKV2160
 2161 TVDSQVVWPP MSRYGFRIED TGHMYIVQTP SHIQIQWLHS SGLMILEASK ASKTQGHGLC2220
 2221 GICDGDTAND LTLKDGSVLG EAEDPALFLD SWQVPSSLTS EGQTRFRPDS CSTADCSPCL2280
 2281 RMVSNRTFSA CHSFVSPESF CELWIRDTKY VQQPCVALTV YVAMCHKFHV CIEWRGSDYC2340
 2341 PFLCSSDSTY QACVAACEPP ETCQDGVLGP LDPEQCQVLG EGCVCSEGTI LHRRHSALCI2400
 2401 PEDKCACTDS TGVPRALGET WNSSLSGCCQ QQCQAPDTIT PMDPDCPGPR PESCPRFGEV2460
 2461 ILLQPTEDPC CLGSVCVCNQ TLCEGLAPTC RPGHRLIPHF QEDSCCPSYS CECDPGLCEA2520
 2521 EQVPTCRQDQ VLIEGRLGDS CCPSYFCGCG ECPDAMPECQ EGEVLTVHRN STELCCPLYQ2580
 2581 CVCESFRCPQ IQCGMGTSLV EVWSPDRCCP YKSCECDCDT IPVPRCHLWE KSQLDEEFMH2640
 2641 SVENVCGCAK YECVKAPVCL SRELGVMQPG QTVVELSADG VCHTSRCTDV LDPLTNFYQI2700
 2701 NITSVLCDMH CEANQEYDHP RDLAACCGSC RNVSCLFTFP NGTTSLFLPG ASWIADCARH2760
 2761 HCGSTPLGAV LVRSPISCPP LNETECAKVG GSVVPSLEGC CRTCKEDGRS CKKVTIRMTI2820
 2821 RKNDCRSNTP VNLVSCDGRC PSASIYNHNI NTYARFCKCC REVGLQRRSV QLFCATNATW2880
 2881 VPYTVQEPTD CACQWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle