YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460897
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANYSIPLN VSEVVVYDST ISRVLWILTM VVLSITFVLG VLGNGLVIWV AGFRMVHTVT  60
   61 TTCFLNLALA DFSFTVTLPF FVISIAMKEK WPFGWFLCKL VHIVVDINLF GSVFLIALIA 120
  121 LDRCICVLHP VWAQNHRTVS LARKVVVGPW ILALILTLPI FIFMTTVRIP GGNVYCTFNF 180
  181 ASWGNTAEEL LNIANTFVTV RGSIRFIIGF IMPMSIVAIC YGLIAVKIHR RALVNSSRPL 240
  241 RVLTAVVASF FICWFPFQLV ALLGTIWFKE SLFSGRYKIL DMWVHPTSSL AYFNSCLNPM 300
  301 LYVFMGQDFR ERLIHSLPSS LERALSEDSG QTSDTGISSA LPPVNIDIKA I

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.83
Transmembrane Helix	26	51	0.87
Cytoplasmic	52	62	0.70
Transmembrane Helix	63	86	0.87
Non-Cytoplasmic	87	102	0.81
Transmembrane Helix	103	126	0.78
Cytoplasmic	127	145	0.79
Transmembrane Helix	146	165	0.94
Non-Cytoplasmic	166	203	0.91
Transmembrane Helix	204	225	0.93
Cytoplasmic	226	241	0.87
Transmembrane Helix	242	266	0.86
Non-Cytoplasmic	267	283	0.92
Transmembrane Helix	284	306	0.75
Cytoplasmic	307	351	0.86