YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460470, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNYIKNFY EGCVKPPTVI GQFHTLFFGS VRMFFLGVLG FAVYGNEALH FSCDPDKREI  60
   61 NLFCYNQFRP ITPQVFWALQ LVIVLLPGAI FHLYAACKSI NQECILQKPT YTVIYILSAL 120
  121 LRISLEVSAF WLQIHLFGFQ VKPVYLCDAE SLGQKINTLK CMVPEHFEKT IFLIAMYTFT 180
  181 VITMVLCVAE IFEIIFRRSC FLFKR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.87
Non-Cytoplasmic	44	75	0.94
Transmembrane Helix	76	96	0.94
Cytoplasmic	97	110	0.91
Transmembrane Helix	111	134	0.86
Non-Cytoplasmic	135	172	0.96
Transmembrane Helix	173	196	0.90
Cytoplasmic	197	205	0.96