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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109457619, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAAGGILLL LLLGILEGSQ TQRPQQRRQS PAHQQRGLFP AVLNLASNAL ITTNATCGEK  60
   61 GPEMYCKLVE HVPGQPVRNP QCRICNQNSS HPYQRHPITN AIDGKNTWWQ SPSIKNGVEY 120
  121 HYVTITLDLQ QVFQIAYVIV KAANSPRPGN WILERSLDDE EYKPWQYHAV TDTECLTLYN 180
  181 IYPRTGPPSY AKDDEVICTS FYSKIHPLEN GEIHISLING RPSADDPSPE LLEFTSARYI 240
  241 RLRFQRIRTL NADLMMFAHK DPREIDPIVT RRYYYSVKDI SVGGMCICYG HARACPLDPA 300
  301 TNKSRCECEH NTCGESCDRC CPGFHQKPWR AGTFLTKTEC EACNCHGKAE ECYYDETVAS 360
  361 RNLSLNIHGK YIGGGVCINC THNTAGINCE TCIDGFFRPK GVSPSYPRPC QPCHCDPAGS 420
  421 LSEVCIKDEK HTRRGLKPGS CYCKPGFGGM NCDRCVRGYR GYPDCQPCNC SGLGSTNQDP 480
  481 CIGPCSCKEN VEGEDCSHCK FGFFNLQEEN QKGCEECFCS GVSDRCQSSY WTYGNIQDMH 540
  541 GWYLTDLSGR IQVAPQLDNP DAPQQISVSN SEARRSLPDS YYWSAPAPYL RNKLPAVGGQ 600
  601 LSFTISYDLE EEEDDTEKIL QLMIILEGNN LRISTAYKEV HLEPSEEHVE ELSLKEESFT 660
  661 IHGTNLPVSR KDFMILLTNL ERVLIQTTYN LGMDVIFRLS SVNLESAVPY PTDRSIASAV 720
  721 EVCQCPPGYS GSSCEACWPR HRRVNGTIFG GLCEPCQCFG HAEACNDVTG ECLSCKDHTG 780
  781 GPYCNECLPG FYGDPTRGTS EDCQPCACPL NIPSNNFSPT CHLDRSLGLI CDECPVGYTG 840
  841 PRCERCAEGY FGQPSIPGGS CQPCLCNDNL DFSIPGSCDS LSGSCLICKP GTTGRFCELC 900
  901 ADGYFGDAVD AKNCQPCRCN VNGSFSEICH RKTGQCECRP NVQGQRCDEC KPETFGLQLG 960
  961 RGCIPCNCNS FGSKSFDCEA SGQCWCQPGV AGKKCDRCAH GYFNFQEGGC TACDCSHLGN1020
 1021 NCNPKTGQCI CPPNTIGEKC SECLPNTWGH SIVTGCKVCN CSTVGSLSSQ CNINTGQCSC1080
 1081 HPKFSGMKCS ECNRGHWNYP LCSLCDCFLP GTDATTCDSE TRKCSCSDQT GQCTCKVNVE1140
 1141 GVHCDRCRPG KFGLEAKNPL GCSSCYCFGV TSQCSEAKGL VRTWVTLRDE QTILPLVDEA1200
 1201 LQHTTTKGIA FQNPEIVAKM DEVRQDLHLE PFYWKLPEQF EGKKLMAYGG KLKYTIYFEA1260
 1261 RDETGFATYK PQVIIRGGTP THARIITRHM AAPLIGQLTR HEIEMTEKEW KYYGDDPRIS1320
 1321 RTVTREDFLD ILYDIHYILI KATYGNVVRQ SRISEISMEG AEPGQVSAAS PLANLIERCD1380
 1381 CPPGYSGLSC ETCAPGFYRV HSEPGGRTPG PTLGTCVPCQ CHGHSSQCDP ETSVCQNCQH1440
 1441 HTAGDFCERC ALGYYGIVRG LPNDCQPCAC PLISPSNNFS PSCVLEGLED YRCTACPRGY1500
 1501 EGQYCERCAP GYAGSPSSPG GSCQECECDP YGSLPVPCDP VTGLCTCRPG ATGRKCDGCE1560
 1561 HGHAREGAEC VFCGDECTGL LLGDLAHLEQ MAMNINLTGP LPAPYKILYG LENATQELKH1620
 1621 LLSPQRAPER LLQLAEGNMN TLVMEMNELL TRATKVTADG EQTGQDAERT NSRAQSLEEF1680
 1681 IKGLVQHAEA VNEKAIKLNE TLGSQDRTAE RNLQELQKEI DRMLKELRSK DLQTQKEVAE1740
 1741 DELVAAEGLL KRVNKLFGEP RAQNEEMEKD LREKLAEYQN KLDDAWDLLR EATKKTKDAD1800
 1801 RLSAANQKNM TILETKKEAI EGSKRQIENT LKEGNDILDE ANRLAGEITS VIDYVEDIKT1860
 1861 KLPPMSEELS DKIDDLAQEI KDRRLAEKVF QAESHAAQLN DSSAVLDGIL DEAKNISFNA1920
 1921 TAAFRAYSNI KDYIDEAEKV AREAKELAHE ATKLATSPQG LLKEDAKGSL QKSFRILNEA1980
 1981 KKLANDVKEN HNDLSGLKTR LETADLRNSG LLGALNDTMD KLSAIPNDTA AKLQAVKEKA2040
 2041 REANDTAKAV LAQVKDLHQN LDGLKQNYNK LADSVAKTNA VVKDPSKNKI IADAGATVRN2100
 2101 LEQEADRLID KLKPIKELED NLKKNISEIK ELINQARKQA NSIKVSVSSG GDCIRTYKPE2160
 2161 IKKGSYNNIV VHVKTAVADN LLFYLGSAKF IDFLAIEMRK GKVSFLWDVG SGVGRVEYPD2220
 2221 LTIDDSYWYR IEASRTGRNG SISVRALDGP KASMVPSTHH SVSPPGYTIL DVDANAMLFV2280
 2281 GGLTGKIKKA DAVRVTTFTG CMGETYFDNK PIGLWNFREK EGDCKGCTVS PQVEDSEGTI2340
 2341 QFDGEGYALV SRPIRWYPNI STVMFKFRTF SSNALLMYLA TRDLKDFMSV ELSDGHVKVS2400
 2401 YDLGSGMASV VSNQNHNDGK WKSFTLSRIQ KQANISIVDI DSNQEENIAT SSSGNNFGLD2460
 2461 LKADDKIYFG GLPTLRNLSM KARPEVNVKK YSGCLKDIEI SRTPYNILSS PNYVGVTKGC2520
 2521 SLENVYTVSF PKPGFVELAA VSIDVGTEIN LSFSTRNESG IILLGSGGTL TPPRRKRRQT2580
 2581 TQAYYAIFLN KGRLEVHLSS GTRTMRKIVI KPEPNLFHDG REHSVHVERT RGVFTVQVDE2640
 2641 NRRHMQNLTE EQPIEVKKLF VGGAPPEFQP SPLRNIPAFQ GCVWNLVINS IPMDFAQPIA2700
 2701 FKNADIGRCA YQKPREEEDD AVPAEVTVQP QPVPTPAFPF PAPTMVHGPC VAESEPAFLS2760
 2761 GSKQFGLSRN SHIALAFDDT KVKNRLTIEL EVRTEAESGL LFYMARINHA DFATVQLRNG2820
 2821 FPYFSYDLGS GDTSTMIPTR INDGQWHKIK ITRVKQEGIL SVDDASNQTI SPKKADILDV2880
 2881 VGILYVGGLP INYTTRRIGP VTYSLDGCVR NLYMEQAPVD LDQPTSSFHV GTCFANAEKG2940
 2941 TYFDGTGFAK AVGGFKVGLD LLVEFEFRTT RPTGVLLGVS SQKMDGMGIE MIDEKLMFHV3000
 3001 DNGAGRFTAV YDAGSPGHMC DGRWHKVTAK KIKNRLELVV DGNQVDAQSP NAASTSADTN3060
 3061 DPVFVGGFPD GLNQFGLTTN VRFRGCIRSL KLTKGTGKPL EVNFAKALEL RGVQPVSCPT3120
 3121 T

YRC Informatics Platform - Version 3.0
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