YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460369, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.84
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	542	0.83
Transmembrane Helix	543	560	0.52
Cytoplasmic	561	571	0.90
Transmembrane Helix	572	593	0.93
Non-Cytoplasmic	594	605	0.81
Transmembrane Helix	606	625	0.92
Cytoplasmic	626	645	0.83
Transmembrane Helix	646	668	0.93
Non-Cytoplasmic	669	693	0.95
Transmembrane Helix	694	717	0.89
Cytoplasmic	718	728	0.84
Transmembrane Helix	729	749	0.92
Non-Cytoplasmic	750	756	0.89
Transmembrane Helix	757	782	0.81
Cytoplasmic	783	794	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLCAFTIA IFSLKFCLIL CSLTEPNCFW RIKSSEDNDG DLRSDCGFVL FTHEGPIPED  60
   61 FYNDIINFRI PARKYEFFLV LLFATDEINK NPYLLPNMSL IFNIIFGLCE DTLGVLDKAY 120
  121 LHQNSNSELF NYYCGINQLC DVDLTGPSWT TSLKLSIYSR TPKIFFGSFN PNLSDHDQFP 180
  181 YIYQIAAKDT YLFHGMVSLM FHFGWTWIGL VISDDDQGIQ FLSDLREEMQ RHAICLAFVN 240
  241 MIPETMQIYK TRVKIYDQQL MTSSAKVVII YGEVNSTLEL SFRRWAYLGA QRIWITTSQW 300
  301 DVITHKKDFS LDFSHGTVTF AHHHNDIAVF RNFMQTINTS MYPVDISQSM LQWNHFNCSI 360
  361 SKNKKKMDCF TFKNPLEWLI QHTFDMVLSE EGYNLYNAVY AVAHTYHKLI FQQVESQKME 420
  421 EPKGLFTDCQ QVTSLLKTIE FTNPVGELVD TKHKENQCAT YDIFITWNFP QGLGLKVKIG 480
  481 SYFPCLPQSQ QLHISEDWEW VTGETLIPPS VCSMTCTAGF RKIHQKETAD CCFDCVQCQE 540
  541 NEIANDTAIT ILVLVTFVKY KDTPIVKANN RILSYILLIS LVFCFLCSLL YIGHPNQATC 600
  601 ILQQTTFAIF FTVAISTVLA KTITVVTAFK LTTPERRIKK IMIKGAINLL IPICTLIQLV 660
  661 LCAVWLVISP PFIDRDIQSE HGKVIIICNK GSVIAFHFVL GYLGSLALGS FTVAFLARNL 720
  721 PDRFNEAKFL TFSMLVFYSV WITFLPVYHS TRGKDMVIVE VFSILASSAG LLGCIFFQKC 780
  781 YVLLVRPDLN VLRK