YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109460116
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	354	0.82
Transmembrane Helix	355	377	0.92
Cytoplasmic	378	421	0.97
Transmembrane Helix	422	446	0.89
Non-Cytoplasmic	447	455	0.89
Transmembrane Helix	456	480	0.83
Cytoplasmic	481	491	0.90
Transmembrane Helix	492	514	0.93
Non-Cytoplasmic	515	521	0.79
Transmembrane Helix	522	544	0.91
Cytoplasmic	545	578	0.90
Transmembrane Helix	579	600	0.90
Non-Cytoplasmic	601	614	0.79
Transmembrane Helix	615	639	0.91
Cytoplasmic	640	647	0.84
Transmembrane Helix	648	668	0.91
Non-Cytoplasmic	669	684	0.87
Transmembrane Helix	685	706	0.92
Cytoplasmic	707	721	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSGKELLS AQGTGTNLAA ETNNQQIPVP AHQGRSDCNT KEELGLGSKS DVAHQMLWES  60
   61 RRRDAQSPKD MMQVPMGGRG SEAGGRGRRG AGGDGGGGSG WARAPCVCPR PVDVNRRRRR 120
  121 RSRWAGAQPV GARRMRPLPG APGVAAAAAL LLLLLPRARS DEHEHTYQDK EEVVLWMNTV 180
  181 GPYHNRQETY KYFSLPFCVG SKKSISHYHE TLGEALQGVE LEFSGLDIKF KDDVMPGTYC 240
  241 EIDLDKEKRD AFVYAIKNHY WYQMYIDDLP IWGIVGEADE NGEDYYLWTY KKLEIGFNGN 300
  301 RIVDVNLTSE GKVKLVPNTK IQMSYSVKWK KSDVKFEDRF DKYLDPSFFQ HRIHWFSIFN 360
  361 SFMMVIFLVG LVSMILMRTL RKDYARYSKE EEMDDMDRDL GDEYGWKQVH GDVFRPSSHP 420
  421 LIFSSLIGSG CQIFAVSLIV IIVAMIEDLY TERGSMLSTA IFVYAATSPV NGYFGGSLYA 480
  481 RQGGRRWIKQ MFIGAFLIPA MVCGTAFFIN FIAIYYHASR AIPFGTMVAV CCICFFVILP 540
  541 LNLVGTILGR NLSGQPNFPC RVNAVPRPIP EKKWFMEPAV IVCLGGILPF GSIFIEMYFI 600
  601 FTSFWAYKIY YVYGFMMLVL VILCIVTVCV TIVCTYFLLN AEDYRWQWTS FLSAASTAIY 660
  661 VYMYSFYYYF FKTKMYGLFQ TSFYFGYMAV FSTALGIMCG AIGYMGTSAF VRKIYTNVKI 720
  721 D