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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109460082
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSRCTFPT NPSARPRLPR LARPECSHCA RASRRHARSQ DPTELAGVVS AASAVASLRG  60
   61 SASGFALPPL RWGSRGSRSR AWGARRRGHG TAPALVTAGS GAARALSASP AGGLALLLAG 120
  121 PGLLLPLLAL LLAAAAARIM SGRRCAGGGA ACSSAVAEAV EPSARELFEA CRNGDVERVK 180
  181 RLVTPEKVNS RDTAGRKSTP LHFAAGFGRK DVVEYLLQNG ANVQARDDGG LIPLHNACSF 240
  241 GHAEVVNLLL QHGADPNARD NWNYTPLHEA AIKGKIDVCI VLLQHGAEPT IRNTDGRTAL 300
  301 DLADPSAKAV LTGDYKKDEL LESARSGNEE KMMALLTPLN VNCHASDGRK STPLHLAAGY 360
  361 NRVKIVQLLL QHGADVHAKD KGDLVPLHNA CSYGHYEVTE LLVKHGACVN AMDLWQFTPL 420
  421 HEAASKNRVE VCSLLLSYGA DPTLLNCHNK SAIDLAPTAQ LKERLSYEFK GHSLLQAARE 480
  481 ADVTRIKKHL SLEMVNFKHP QTHETALHCA AASPYPKRKQ ICELLLRKGA NTNEKTKEFL 540
  541 TPLHVASENA HNDVVEVVVK HEAKVNALDS LGQTSLHRAA HCGHLQTCRL LLSYGCDPNI 600
  601 ISLQGLTALQ MGNENVQQLL QEGVSLGHSE ADRQLLEAAK AGDVETVKKL CTVQSVNCRD 660
  661 IEGRQSTPLH FAAGYNRVSV VEYLLQHGAD VHAKDKGGLV PLHNACSYGH YEVAELLVKH 720
  721 GAVVNVADLW KFTPLHEAAA KGKYEICKLL LQHGADPTKK NRDGNTPLDL VKDGDTDIQD 780
  781 LLRGDAALLD AAKKGCLARV KKLSSPDNVN CRDTQGRHST PLHLAAGYNN LEVAEYLLQH 840
  841 GADVNAQDKG GLIPLHNAAS YGHVDVAALL IKYNACVNAT DKWAFTPLHE AAQKGRTQLC 900
  901 ALLLAHGADP TLKNQEGQTP LDLVSADDVS ALLTAAMPPS ALPTCYKPQV LSGVRSPGAT 960
  961 ADALSSGPSS PSSLSAASSL DNLAGSFSEL SAVVSSSTTE GATGLERKED SGIDFSITQF1020
 1021 IRNLGLEHLM DIFEREQITL DVLVEMGHKE LKEIGISAYG HRHRLIKGVE RLISGQQGLN1080
 1081 PYLTLNNSGS GTILIDLSPD DKEFQSVEEE MQSTVREHRD GGHAGGIFNR YSILKIQKVC1140
 1141 NKKLWERYTH RRKEVSEENH NHANERMLFH GSPFVNAIIH KGFDERHAYI GGMFGAGIYF1200
 1201 AENSSKSNQY VYGIGGGTGC PVHKDRSCYI CHRQLLFCRV TLGKSFLQFS AMKMAHSPPG1260
 1261 HHSVTGRPSV NGLALAEYVI YRGEQAYPEY LITYQIVRPE GMGDG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle