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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109458488
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDGKKRNH FLTFTINTGF VPRQVMTFRD VAVDFSPEEW ACLSLEQRSL YRDVMLENYS  60
   61 HLVSVEMVSS LGKPVFTVLP ECVVLFLCPS CPCCTSFVTR APAQTFWLLF RVVTTCLYFI 120
  121 LHAGLCIYQP HVFPVLEKEQ DACVDLSNET SRFLPDTDSG WQMKKVLPKN SIFGSRLSRW 180
  181 EVMRMERNQG LEGSSPGVDW EDKGQDQSQN ENQEERLKQM TLTCDKLPLL NLLTAFNQCP 240
  241 RLNTAEKAKE FKSEKSFSFA PEPSQLQLIH TDAKFREDKS CGKTFPPGPK LPRYRAVPAG 300
  301 KKAFQCEECG KAFSFRSSLT GHKRIHTGEK PFKCKECGKA FRFHSLLSVH VRTHTGEKSY 360
  361 ECKECGKYFN YSSDLTRHHR IHTGEKPYQC RECGKAFSCG SDLTRHQRIH TGEKPYECHE 420
  421 CGKAFIQQSH LIKHQRIHTG EKPYVCKECG KAFRCPSDLS RHQKIHTGEK PYKCKECGKG 480
  481 FICRSDLGRH QRVHTGVKPY ECKECGKAFR YSSELTRHQR LHTGEKPYKC QECWKAFASA 540
  541 SDLARHQRIH TGERPYECNE CGKAFIQQSH LIKHQRVHNG YSTEKPYKCE ECGKAFRRAS 600
  601 HLSQHHSIHT GEKPYECKQC GKAFSRDSQL SLHQRLHTGE KPYTCKECGK AFTQSSQLIL 660
  661 HHRIHTGEKP YKCEACGKAF IRSSQLSRHQ KVHTGEKPFE CKECGKVFTQ LSQLILHRRI 720
  721 HTGEKPYECK ECGKAFICGS QLSQHQKTHN GEKPYECKEC GKAFIRGSLL MQHQRIHTGE 780
  781 KPYKCDECGK AFIRGSQLTQ HQRIHTNEKP YECKECGKTF SHGSQLTQHQ RIHTGEKPYQ 840
  841 CKECGKAFNR GSLLTRHQRI HTGEKPYKCK ECGKDFSRGS ELTQHERIHT GEKPYECKEC 900
  901 GKSFIRGSQL TQHQRIHTGE KPYECKECRM AFTQSSHLSQ HQRLHTGEKP YVCSECGKAF 960
  961 ARGLLLIQHQ RIHTGEKPYE CRECGKAFIR GSQLTQHQRT HTGEKPYECR ECGKAFGHGS1020
 1021 QLTLHQRVHT GEKPYECKEC RKAFAQSSHL SRHQRVHTGE KPYQCKECEK AFTRGSQLTQ1080
 1081 HQRIHITEKP YECKKCRKVF TQNSQFIQHQ RIHIGEKSYE CKECGKFFSC GSHVTRHLKI1140
 1141 HTGEKPFECK DCGKAFSCSS YLSQHQRIHT GKKPYECKDC GKAFSYCSNL IDHQRIHTGE1200
 1201 KPYACKVCGK AFTKSSQLFQ HVRVHTGEKP YECKECGKAF TQSSKLVQHQ RIHTGEKPYE1260
 1261 CKECGKAFSS GSALTNHQRI HTGEKPYECK DCGKAFTQSS QLRQHQRIHA GEKPFECLEC1320
 1321 GKAFTQNSQL FQHQRVHSDE KPYECNKCGK AFNKCSNLTR HLRTHRDDKP CSCNECGKTF1380
 1381 SNESELIRHQ EVHSNE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle