YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92098329, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGMHMLA SALALMGWTA ALLCCILPMW RVTAFIGTTI VTSEIMWEGI WMNCVVQSTG  60
   61 QIQCKPYEST LALDVNLQAS RALMVMSVIV GAVGLILTFI GGKCTIFLIR SERSKMKIVT 120
  121 AAGAILIIAG ILCLIPPSWS AGMVVKAFYN PQLADPQRRE LGGAIYLGWG GAIVLILSGG 180
  181 ILCTSKCKDK PEDDRGPSVK YLVVRSSQAG SSRPGSQRMH PISVRSLQSG APSVRSQWSQ 240
  241 KAPFIQGRPQ SVGSNQSRPT PTKSQFASSE SMLVSEQDEG MSTKSQLFHD GFIH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	32	0.80
Non-Cytoplasmic	33	81	0.87
Transmembrane Helix	82	107	0.83
Cytoplasmic	108	117	0.92
Transmembrane Helix	118	140	0.91
Non-Cytoplasmic	141	162	0.91
Transmembrane Helix	163	185	0.89
Cytoplasmic	186	294	0.99