YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220679611, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNPYYDMT NNSLDNCTDV DDKVKRYYLP AMYGAIFIVG VIGNITALLV YLLKVRPWKS  60
   61 STIIMVNLVL TDLLFMISLP FLVYYYVLND SWTLGITVCR FARFIFHFNL YGSILFLTCF 120
  121 SIFRYVAIVH PQHSHKIRRK RWGVVSCALV WVVTVAELSP IFNLFATMEI DNKTYCLDFA 180
  181 SNDAQKIWPY SWVLTVLGYL VPLVVVCVCY WRIIEKLKEG PHMGCKKRVR ARRFIVLILT 240
  241 CFAVCFLPFH VLRAFRIYTR LTPETNCMLD HGVHAAYIIS RPIAVLNIIF NLPLYTLSGD 300
  301 SFKQAFVEIF KCDKFKSSNE RLVQLAVIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.96
Transmembrane Helix	33	53	0.94
Cytoplasmic	54	62	0.89
Transmembrane Helix	63	87	0.88
Non-Cytoplasmic	88	104	0.94
Transmembrane Helix	105	128	0.87
Cytoplasmic	129	141	0.94
Transmembrane Helix	142	162	0.91
Non-Cytoplasmic	163	191	0.90
Transmembrane Helix	192	214	0.92
Cytoplasmic	215	233	0.94
Transmembrane Helix	234	252	0.98
Non-Cytoplasmic	253	277	0.86
Transmembrane Helix	278	295	0.64
Cytoplasmic	296	329	0.65