YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|92096476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNILQIFAL LLGFLGCGSA VLSLYNHYWK VSTDDDSVII TSNIFENLWM SCADDSSGTF  60
   61 SCRDFQSLLA LPGYIQACRA LIITSIVLGT FGLVATLVGM QCFKIGGGNY IMKSRIAGAG 120
  121 GVFFILQGLC TMTAVSWYAF NITQEFFDPL YPGIKYEIGE GLYIGWSSAT LALCSGSCLL 180
  181 CSCGLCTPMG KKSFRQSHLQ DFRSSHQPQS INIVPTVSTT SHYLSRQYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	28	0.73
Non-Cytoplasmic	29	79	0.95
Transmembrane Helix	80	100	0.93
Cytoplasmic	101	115	0.87
Transmembrane Helix	116	140	0.88
Non-Cytoplasmic	141	165	0.91
Transmembrane Helix	166	187	0.91
Cytoplasmic	188	229	0.96