YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HSTC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSISQSPR VRFSSLAPRF LAASHHHRPS VHLAGKFISL PRDVRFTSLS TSRMRSKFVS  60
   61 TNYRKISIRA CSQVGAAESD DPVLDRIARF QNACWRFLRP HTIRGTALGS TALVTRALIE 120
  121 NTHLIKWSLV LKALSGLLAL ICGNGYIVGI NQIYDIGIDK VNKPYLPIAA GDLSVQSAWL 180
  181 LVIFFAIAGL LVVGFNFGPF ITSLYSLGLF LGTIYSVPPL RMKRFPVAAF LIIATVRGFL 240
  241 LNFGVYHATR AALGLPFQWS APVAFITSFV TLFALVIAIT KDLPDVEGDR KFQISTLATK 300
  301 LGVRNIAFLG SGLLLVNYVS AISLAFYMPQ VFRGSLMIPA HVILASGLIF QTWVLEKANY 360
  361 TKEAISGYYR FIWNLFYAEY LLFPFL

Type	Start	End	Confidence
Cytoplasmic	1	128	0.82
Transmembrane Helix	129	150	0.82
Non-Cytoplasmic	151	176	0.46
Transmembrane Helix	177	211	0.78
Cytoplasmic	212	226	0.64
Transmembrane Helix	227	248	0.89
Non-Cytoplasmic	249	258	0.86
Transmembrane Helix	259	280	0.91
Cytoplasmic	281	300	0.93
Transmembrane Helix	301	325	0.86
Non-Cytoplasmic	326	335	0.74
Transmembrane Helix	336	355	0.93
Cytoplasmic	356	386	0.63