YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|95105606
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVWTTANNS GLETPTKSPI TSSVPRASRS SAVITTGNHQ QHHFQHVVAA AVAAATSVAT  60
   61 GHQFQQQFPL HAHPHPHPQH HSNSPTGSGS NSNNSAGFQR TSISNSLLQF PPPPPPSSQN 120
  121 QAKPRGHHRT ASSSMSQSGE DLHSPTYLSW RKLQLSRAKL KASSKTSALL SGFAMVAMVE 180
  181 VQLDHDTNVP PGMLIAFAIC TTLLVAVHML ALMISTCILP NIETVCNLHS ISLVHESPHE 240
  241 RLHWYIETAW AFSTLLGLIL FLLEIAILCW VKFYDLSPPA AWSACVVLIP VMIIFMAFAI 300
  301 HFYRSLVSHK YEVTVSGIRE LEMLKEQMEQ DHLEHHNNIR NNGMNYGASG DIV

Type	Start	End	Confidence
Cytoplasmic	1	161	0.92
Transmembrane Helix	162	183	0.82
Non-Cytoplasmic	184	192	0.80
Transmembrane Helix	193	212	0.94
Cytoplasmic	213	248	0.87
Transmembrane Helix	249	271	0.90
Non-Cytoplasmic	272	279	0.81
Transmembrane Helix	280	302	0.94
Cytoplasmic	303	353	0.96