YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109132122
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGRKRIPT KPYVSGSLLG TLLAFVHECF AHNNTISADS WLLQGCGRWS PVLLTQVQRA  60
   61 FSLVLQLLLY HRRRCRRRLL CGVMVCFRLF PVPGSGLVLV CLVLDSGKAT CLYAKWQMNF 120
  121 TVRYETTNKT YKTVTISDRG TVTYNGSICG DDQNGPKIAV QFGPGFSWIA NFSKAASTYS 180
  181 IDSISFSYNT GDNTTFPDAE DKGIITVDEL LAIKIPLNDL FRCNSLSTLE KNDVVQNYWD 240
  241 VLVQAFVQNG TVSTNEFLCD EDKTSTVAPT IHTTVPSPTT TPTPKEKPEA GTYSVNNGNE 300
  301 TCLLATMGLQ LNITQDKVAS VININPNTTH STGSCRSHTA LLRLNSSTIK YLDFVFAVKN 360
  361 ENRFYLKEVN VSMYLVNGSV FSIANNNLSY WDAPLGSSYM CNKEQTVSVS GAFQINTFDL 420
  421 RVQPFNVTQG KYSTAQDCSA DDDNFLVPIA VGAALAGVLI LVLLAYFIGL KRHHAGYEQF 480
  481

Type	Start	End	Confidence
Signal Peptide	1	31	0.77
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	448	0.93
Transmembrane Helix	449	470	0.92
Cytoplasmic	471	480	0.96