YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109131742
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKGNSSHG LLECCARCLV GAPFASLVAT GLCFFGVALF CGCGHEALTG TEKLIETYFS  60
   61 KNYQDYEYLI NVIHAFQYVI YGTASFFFLY GALLLAEGFY TTGAVRQIFG DYKTTICGKG 120
  121 LSATVTGGQK GRGSRGQHQA HSLERVCHCL GKWLGHPDKF VGITYALTVV WLLVFACSAV 180
  181 PVYIYFNTWT TCQSIAFPSK TSASIGSLCA DARMYGVLPW NAFPGKVCGS NLLSICKTAE 240
  241 FQMTFHLFIA AFVGAAATLI SLLTFMIAAT YNFAVLKLMG RGTKF

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	40	0.92
Non-Cytoplasmic	41	77	0.90
Transmembrane Helix	78	100	0.84
Cytoplasmic	101	160	0.95
Transmembrane Helix	161	185	0.88
Non-Cytoplasmic	186	247	0.90
Transmembrane Helix	248	274	0.86
Cytoplasmic	275	285	0.84