YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109131692
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLLTVQEWV AAKAHVCDLL ESLFQLPAGR LRPSGAQGKP KQKPVGLSVS GSFPGEQFWP  60
   61 LAGKDGPEEK RQKRRESRLF ASSPSWRKAL YFWRSCRDIP SHVGSQAEKG LQDPRGMTTL 120
  121 VPATLSFLLL WTLPGQVLLR VALAKEEVKS GTKESQSMSP SDFLDKLMGR TSGYDARIRP 180
  181 NFKGPPVNVT CNIFINSFGS VTETTMDYRV NVFLRQQWND PRLSYREYPD DSLDLDPSML 240
  241 DSIWKPDLFF ANEKGANFHE VTTDNKLLRI FKNGNVLYSI RLTLILSCPM DLKNFPMDIQ 300
  301 TCTMQLESFG YTMNDLVFEW LEDAPAVQVA EGLTLPQFIL RDEKDLGYCT KYYNTGKFTC 360
  361 IEVKFHLERQ MGYYLIQMYI PSLLIVILSW VSFWINMDAA PARVGLGITT VLTMTTQSSG 420
  421 SRASLPKVSY VKAIDIWMAV CLLFVFAALL EYAAVNFVSR QHKEFIRLRR RQRRQRMEED 480
  481 IIQESRFYFH GYGLGHCLQA RDGGPMEGSG IYSPQPPAPL LREGETMRKL YVDRAKRIDT 540
  541 ISRAVFPFTF LIFNIFYWVV YKVLRSEDIH QAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	120	0.54
Transmembrane Helix	121	135	0.22
Cytoplasmic	136	372	0.55
Transmembrane Helix	373	395	0.89
Non-Cytoplasmic	396	435	0.54
Transmembrane Helix	436	458	0.89
Cytoplasmic	459	543	0.82
Transmembrane Helix	544	561	0.85
Non-Cytoplasmic	562	573	0.82