YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109131615
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNAEDLCEV VDPTLGVTSR TLMSYRGDYG IEVIENTIDG FTYWETGVRK TGCVTDLYKR  60
   61 KPLRRKQQTL RSPVGLLFTV LYILLLVTDH SVGERKWENT VVKPGPPQFV SGLKLNCRQG 120
  121 QSKVTHYYVC VGGSASTWWG LSGNPGGLVA ECHDHGSPFQ GRKKGGNSFR DNSDKRNCHH 180
  181 EHGGYERPSS HCQENDGSVE MRDVHKDQQL RHTPYSIRCD RRMKWHSEDE ICITTWRNRK 240
  241 PPGRKMRQNT QDGYTRNWFK VTIPYGIKYD KSWLMNSIQS HCSAPFTPVD FHYIRNRACF 300
  301 FVQDATTASV LKDVSYKICD DENRKICIFV NHSTAPYSVK NKLKPGQMEM LKLTMNKRYN 360
  361 VSQQALDLQN LRFDPDLMGR DIDIILNRRN CMAATLKIIE RNFPELLSLN LCNNKLYQLD 420
  421 GLSDIIEKAP KVKTLNLSKN KLESAWELGK VKGLKLEELW LEGNPLCSTF SDQSAYVSAI 480
  481 RDCFPKLLRL DGRELSAPMI VDIDSSEIMK PCKENFTGSE TLKHLVLQFL QQYYSIYDSG 540
  541 DRQGLLGAYH DEACFSLAIP FDAEDSAPNS LRKYFEDSRN MKTLKDPHLK GELLRHTKRD 600
  601 IVDSLSALPK TQHDLSSILV DMWCQTEWML CFSVNGVFKE VEGQSQGSVL AFTRTFIATP 660
  661 GGSSSLCIVN DELFVRDASP QETQSAFSIP VSTLSSSSEP SLSQEQQEMV QAFSAQSGMK 720
  721 LEWSQKCLQD NEWNYTRAGQ VFTMLQTEGK IPAEAFKQIS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle