YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109130442
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAGNTVMGS APHLVHTELK ICAEEMGEAN NNAKPGFHAP LEALPNTQER LVIGGESGSC  60
   61 PSGRDEGTGP GSLEESERVA PSRCGCRSCP AGSLRVALHC CGRRGTMAVF VVLLALVAGV 120
  121 LGNEFSILRS PGSVVFRNGN WPIPGERIPD VAALSMGFSV KEDLSWPGLA VGNLFHRPRA 180
  181 TVMVMVKGVD KLALPPGSVI SYPLENAVPF SLDSVANSIH SLFSEETPVV LQLAPSEERV 240
  241 YMVGKANSVF EDLSVTLRQL RNRLFQENSV LSSLPLNSLS RNNEVDLLFL SELQVLHDIS 300
  301 SLLSRHKHLA KDHSPDLYSL ELAGLDEIGK RYGEDSEQFR DASKILVDAL QKFADDMYNL 360
  361 YGGNAVVELV TVKSFDTSLV RKTRTILEAK QAKNPASPYN LAYKYNFEYS VVFNMVLWIM 420
  421 IALALAVIIT SYNIWNMDPG YDSIIYRMTN QKIRMD

Type	Start	End	Confidence
Cytoplasmic	1	104	0.88
Transmembrane Helix	105	122	0.84
Non-Cytoplasmic	123	414	0.85
Transmembrane Helix	415	436	0.87
Cytoplasmic	437	456	0.79