YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109129539, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTRWWLWPL VAVCTADFFR DEAERIMRDS PVIDGHNDLP WQLLSMFNNR LQDTRANLTT  60
   61 LANTHTNIPK LRAGFVGGQF WSVYTPCDTQ NQDAVRRTLE QIDVVHRMCQ MYPETFLYVT 120
  121 SSAGIRQAFQ EGKVASLIGV EGGHSIDSSL GVLRALYQLG MRYLTLTHNC NTPWADNWLV 180
  181 DTGDSKPQSQ GLSPFGQRVV KELNRLGVLI DLAHVSVATM KATLQLSRAP VIFSHSSAYS 240
  241 VCASRRNVPD DVLRLVKQTD SLVMVNFYNN YISCTNKANL SQVADHLDHI KEVAGARAVG 300
  301 FGGDFDGVPR VPEGLEDVSK YPDLIAELLR RNWTEAEVKG ALANNLLRVF EAVEQASNPT 360
  361 QAPEEEPIPR DELGGSCRTH YGYPSGASSL HRQWGFLLAS LAALVLCQCL L

Type	Start	End	Confidence
Signal Peptide	1	16	0.89
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	411	0.98