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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109129387
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWKQLTPAP FLHWYQRTSM ADKPMRLQEI LHTEAARCPE TWPARSKVVP CDPRHTFSFL  60
   61 CWPGYCRDDK GSLLNEEEDE GEGRWGSSQD RGQQLVLLGP PQGSSQGVPS LLEPERAEAV 120
  121 LLKATYQTEL EKECVGTGKG PQRSALKDSE WLFIAPWSPV GGTSGYPLPK WVLGKMRASE 180
  181 NLMEATEYKA KGAGFFSKAV LLEGTVPSFL DTVRGCPKEA SLTLAYSHDF RNKGEMWVTL 240
  241 SGVLAAHFWI MSSSLTSSSG QLGSLSSTPF PGSLGNIHEM KMVFGGCFDA KGCTLGTQIF 300
  301 IRLLMPTKMT VAGGAIESWY NLLAIRHAEL VGHPMHQADS RPELSSPLFL RPPAFLLSDS 360
  361 TIAAAAPTGY MENSVSYSAI EDVQLLSWEN APKYCLQLTI PGGTVLLQAA NSYLRDQWFH 420
  421 SLQWKKKIYK YKKVLSNPSR WEVVLKEIRT LVDMALTSPL QDDSINQAPL EIVSKLLSEV 480
  481 NPSLQAPLHS EITGAIAPLL ENNHPPPDLC EFFCKHCRER PRSMVVIEVF TPVVQRILKH 540
  541 NMDFGKCPRL RLFTQEYILA LNELNAGMEV VKKFIQSMHG PTGHCPHPRV LPNLVAVCLA 600
  601 AIYSCYEEFI NSRDNSPSLK EIRNGCQQPC DRKPTLPLRL LHPSPDLVSQ EATLSEARLK 660
  661 SVVVASSEIH VEVERTSTAK PALTASAGND SEPNLIDCLM VSPACSTMSI ELGPQADRTL 720
  721 GCYVEILKLL SDYDDWRPSL TSLLQPIPFP KEALAHEKFT KELKYVIQRF AEDPRQEVHS 780
  781 CLLSVRAGKD GWFQLYSPGG VACDDDGELF ASMVHILMGS CYKTKKFLLS LAENKLGPCM 840
  841 LLALRGNQTM VEILCLMLEY NIIDNNDTQL QIISTLESTD VGKRMYEQLC DRQRELKELQ 900
  901 RKGGPTRLTL PSKSTDADLA RLLSSGSFGN LENLSLAFTN VTSACAEHLI KLPSLKQLNL 960
  961 WSTQFGDAGL RLLSEHLTML QVLNLCETPV TDAGLLALSS MKSLCSLNMN STKLSADTYE1020
 1021 DLKAKLPNLK EVDVRYTEAW 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle