YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109129224
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREGSGGSG GSAGLLQQIL SLKVVPRVGN GTLCPNSTSL CSFPEMWYGV FLWALVSSLF  60
   61 FHVPAGLLAL FTLRHHKYGG EYSEDDVNEL VKEDEVDGEE QTQKTQGKKR KAQSIPARKR 120
  121 KQGGLSLEEE EEEDANSESE GSSSEEEDEA AEQEKGIGSE DARKKKEDEL WASFLNDVGP 180
  181 KSKVPPSTQV KKGEETEETS SSKLLVKAEE LEKPKETEKV KITKVFDFAG EEVRVTKEVD 240
  241 ATSKEAKSFF KQNEKEKPPA NVPSALPSLP AGSGLKRSSG MSNLLGKIGA KKQKMSTLEK 300
  301 SKLDWESFKE EEGIGEELAI HNRGKEGYIE RKAFLDRVDH RQFEIERDLR LSKMKP

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.49
Transmembrane Helix	49	73	0.80
Cytoplasmic	74	356	0.50