YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109128971
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRTPLSASA RRLLLPGSRD RPQRHMQPTG HEGSRALSRR HLRRLLLLLL LLLLRQPVTR  60
   61 GETTTGAPRA LSTLGFPSPF TTPGVPSTLT TPGLTTPGTT TTLDLRSRAQ ALMRDFPLVD 120
  121 GHNDLPQVLR QRYKNVLQDV NLRNFSHSQT SLDRLRDGLV GAQFWSASVS CQTQDQTAVR 180
  181 LALEQIDLIR RMCASYSELE LVTSAEGLNS SQKLACLIGV EGGHSLDSSL SVLRSFYVLG 240
  241 VRYLTLTFTC NTPWAESSTK FTHHMYTNVS GLTSFGEKVV EELNRLGMMI DLSYASDTLM 300
  301 RRVLEVSRAP VIFSHSAARA VCDNSLNVPD DILQLLKKNG GIVMVTLSMG VLQCNLLANV 360
  361 STVADHFDHI RAVIGSEFIG IGGNYDGAGR FPQGLEDVST YPVLIEELLS RSWSEKELQG 420
  421 VLRGNLLRVF RQVEKVREES RAQSPMEAEF PYGQLSTSCH SHLVPQNGHQ ATHLEVTKWP 480
  481 TNRVPWRSSD ASPYLLPGLV AAATFPTVIQ WLC

Type	Start	End	Confidence
Signal Peptide	1	61	0.99
N-region	1	52
H-region	53	58
C-region	59	61
Cleavage Site	61	62
Non-Cytoplasmic	62	513	0.98