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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109124072
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAVGNA VPCGVRPCAA RPCGARPDGQ PKPAPQPRAL LAAGPALIAN GDELVAAVWP  60
   61 YRRLALLRRL TVLPFAGLLY PAWLGAAAAG CWGWGSSWVQ IPEAALLVLA TICLAHALTV 120
  121 LSGHWSVHAH CALTCTPVSV YARARPPAGS GLAVGPSCGL PVGHHPDLGH PSAGPGSPGT 180
  181 PSTLRRRLNH DPAADLLCNP GAGYFLSLKS SLEYDPSKAT FVKVVPTPNN GSTELVALHR 240
  241 NEVGTAGLLE EGLEWDSQAL TPQGQGPLWR THLLPQGEDG LEVLSFEFQK IKYSYDALEK 300
  301 KQFVPVAFPV GNAFSYYQSN RGFQEDSEIR AAEKKFGSNK AEMVVPDFSE LFKERATAPF 360
  361 FVFQVFCVGL WCLDEYWYYS VFTLSMLVAF EASLVQQQMR NMSEIRKMGN KPHMIQVYRS 420
  421 RKWRPIASDE IVPGDIVSIG RSPQENLVPC DVLLLRGRCI VDEAMLTGES VPQMKVLSGG 480
  481 WEPIEDLSPD RVLDLQADSR LHVIFGGTKV VQHIPPQKAT TGLKRSGRQR VCGLRLANRI 540
  541 QHIPGAGPSL GRVDPRAIGQ PRHQPFQTSE YLPHGLTLAA QPWTWARGKL LRTILFGVKR 600
  601 VTANNLETFI FILFLLVFAI AAAAYVWIEG TKDPSRNRYK LFLECTLILT SVVPPELPIE 660
  661 LSLAVNTSLI ALAKLYMYCT EPFRIPFAGK VEVCCFDKTG TLTSDSLVVR GVAGLRDGKE 720
  721 VTPVSNIPVE THRALASCHS LMQLDDGTLV GDPLEKAMLT AVDWTLTKDE KVFPRSIKTQ 780
  781 GLKIHQRFHF ASALKRMSVL ASYEKLGSTD LCYIAAVKGA PETLHSMCPP DYHYIHTEIS 840
  841 REGARVLALG YKELGHLTHQ QVRAQAPPPA FTMCLARQLL PESLPVPYSA KLNGRDFVLL 900
  901 APLLASTFGD PKWHSAREVK REALECSLKF VGFIVVSCPL KADSKAVIRE IQNASHRVVM 960
  961 ITGDNPLTAC HVAQELHFIE KDHTLILQPP SEKGEALAWP TVGKGDPESK NSAHRNSPPV1020
 1021 CQASAAQCLQ MPGTTVAPLI TALAHWAPRT ACECSLGHRY RSYYAYSLSS ASSSSHTLFG1080
 1081 PASCPCTERS LPKHRDCWHP QPQLMAQFAQ CSASPDPRQS TLVRRSRVSR PVPGGLVGRP1140
 1141 RPSQRPASKP GPAVKKGEVE QEDVENSGAL SEWGGGPAPR KQDFREATGA GIGRQCEWRS1200
 1201 IDGSIVLPLA RGSPRALALE HALCLTGDGL AHLQATDPQQ LLRLIPHVQV FARVAPKQKE1260
 1261 FVITSLKELG YVTLMCGDGT NDVGALKHAD VGVALLANAP ERVVERRRRP RDSPTLSNSG1320
 1321 IRATSRTAKQ RSGLPPSEEQ PTSQRPLKTL SRERPLPNIF NLYTILTVML QFFVHFLSLV1380
 1381 YLYREAQARS PEKQEQFVDL YKEFEPSLVN STVYIMAMAM QMATFAINYK GPPFMESLPE1440
 1441 NKPLVWSLAV SLLAIVGLLL GSSPDFNSQF GLVDIPVEVS GPVEVTLGLS LMGPSCGSDP1500
 1501 GLGFRSPVHH PSLPRQFKLV IAQVLLLDFC LALLADRVLQ FFLGTPKLKF QAAQVEEVTI1560
 1561 KASGLRGRGP VWGRGLCWAG RRGTRVAAAA AAGNRGSAPP ARDPIPIPVP AERSPGPDMD1620
 1621 TAEPGLPPAP EGRKRYSDIF RSLDNLEISL GNVTLEMLAG DPPLSEDPEP DKTPTATATN1680
 1681 EASCWSGPSP EGPVPLTGEE LDLRLIRTKG GVDAALEYAK TWSRYAKELL AWTEKRASYE1740
 1741 LEFAKSTMKI AEAGKVSIQQ QSHMPLQYIY TLFLEHDLRL GTLAMETVAQ QKRDYYQPLA1800
 1801 AKRTEIEKWR KEFKEQWMKE QKRMNEAVQA LRRAQLQYVQ RSEDLRARSQ GSPEDPSPQA1860
 1861 SPGPSKQQER RRRSREEAQA KALEAETLYQ ACVREANARQ QDLEIAKQRI VSHVRKLVFQ1920
 1921 GDEVLRRVTL GLFGLRGAQA EYGPSAFAAL AECCVPFEPG QRYQEFVRAL RPEAPPPPPP1980
 1981 AFSFQEFVPS VNSSPLDIRK KLSGPLPPRL DENSAEPGPW EDPGTGWRWQ GTPGPTPGSD2040
 2041 VDSVGGSSES RSLDSPTSSP GAGTRRLVKA SSTGTESSDD FEERDPDLGD GLENGLGSPF2100
 2101 RKWTLSSAAQ THRLRRLRGP AKCRECEAFM VSGTECEECF LTCHKRCLES LLILCGHRRL2160
 2161 PARTPLFGVD FLQLPRDFPE EVPFVVTKCT AEIEHRALDV QGIYRVSGSR VRVERLCQAF2220
 2221 ENGRALVELS GNSPHDVSSV LKRFLQELTD PVIPFHLYDA FISLAKTLHA DPGDDPGTPS2280
 2281 PSPEVICSLK TLLVQLPDSN YNTLRHLVAH LFRVAARFME NKMSANNLGI VFGPTLLRPL2340
 2341 DSPRAAGAIP VTCLLDSGHQ AQLVEFLIVH YEQIFGMDEL PQATEPPPQD SSPAPGPLTA2400
 2401 SSQPPPLDLD PDSQPPVLAS DPGLDPGPDP QPHSALEQHP TATPTEIPTP QSDQREDVAE2460
 2461 DTKDGGGEVS SQGPEDSLLG TQSRGHFSRQ PVKYPRGGVR PVTHQLSSLA LVASKLCEES2520
 2521 PITSVPRGSL RGRGPSPAAA SPEGSPLRRT PLPKHFEITQ ETARLLSKLD SEAVPRATCC2580
 2581 PDVQPEEAED HL

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