YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109123926
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGGWRRLR RLLSAGQLLF QGRALLVTNT LGCGALMAAG DGLRQSWEIR ARPGQVFDPR  60
   61 RSASMFAVGC SMGPFLHYWY LSLDRLFPAS GLRGFPNVLK KVLVDQLVAS PLLGVWYFLG 120
  121 LGCMEGQTVG ESCQELREKF WEFYKADWCV WPAAQFVNFL FVPPQFRVTY INGLTLGWDT 180
  181 YLSYLKYRSP VPLTSPGCVA LDTRAD

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	39	0.89
Non-Cytoplasmic	40	62	0.87
Transmembrane Helix	63	81	0.88
Cytoplasmic	82	101	0.82
Transmembrane Helix	102	120	0.61
Non-Cytoplasmic	121	206	0.56