YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109123711
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRETQAAC GPPAIPHCSR VEILDAKTRE KLCFLDKVEP HATIAEIKNL FTKTHPQWYP  60
   61 ARQSLRLDPK GKSLKDEDIL QKLPVGTTAT LYFRDLGAQI SWVTVFLTEY AGPLFIYLLF 120
  121 YFRVPFIYGH KYDFTSSRHT VVHLACICHS FHYVKRLLET LFVHRFSHGT MPLRNIFKNC 180
  181 TYYWGFAAWM AYYINHPLYT PPTYGAQQVK LALAIFVICQ LGNFSIHMAL RDLRPAGSKT 240
  241 RKIPYPTKNP FTWLFLLVSC PNYTYEVGSW IGFAIMTQCL PVALFSLVGF TQMTIWAKGK 300
  301 HRSYLKEFRD YPPLRMPIIP FLL

Type	Start	End	Confidence
Cytoplasmic	1	99	0.89
Transmembrane Helix	100	121	0.79
Non-Cytoplasmic	122	138	0.65
Transmembrane Helix	139	154	0.73
Cytoplasmic	155	174	0.87
Transmembrane Helix	175	194	0.84
Non-Cytoplasmic	195	210	0.76
Transmembrane Helix	211	230	0.93
Cytoplasmic	231	248	0.91
Transmembrane Helix	249	265	0.92
Non-Cytoplasmic	266	273	0.64
Transmembrane Helix	274	296	0.89
Cytoplasmic	297	323	0.97