YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109123166
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSGLASA LESYRGRDRL IRVLGYCCQL VGGVLVEQCP TRSEVGTRLL VVSTQLSHCR  60
   61 TILRLFDDLS MFVYTKQYGL GAQEEDAFVR LVSVLGNLAD QLYYPCEHVA WAADARVLHV 120
  121 DSSRWWTLST ALWALSLLLG VARSLWMLLK LRQRLRSPTA PFTSPLPRGK RRAMEAQMQS 180
  181 EALSLLSNLA DLANAVHWLP RGVLWAGRFP PWLVGLMGTI SSILSMYQAA RAGGQAEATT 240
  241 P

Type	Start	End	Confidence
Non-Cytoplasmic	1	124	0.71
Transmembrane Helix	125	147	0.89
Cytoplasmic	148	208	0.67
Transmembrane Helix	209	230	0.82
Non-Cytoplasmic	231	241	0.47