YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109123108
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSPGDAER RQRWGRLFEE LDSNKDGRVD VHELRQGLAR LGGGNPDPGA QQGISSEGDA  60
   61 DPDGGLDLEE FSRYLQEREQ RLLLMFHSLD RNQDGHIDVS EIQQSFRALG ISITLEQAEK 120
  121 ILHSMDRDGT MTIDWQEWRD HFLLHSLENV EDVLYFWKHS TLPSAGFSAW IKDSTTERNR 180
  181 SKTTVFAGRG GSRLESQHFG RPRQADHEVL DIGECLTVPD EFSKQEKLTG MWWKQLVAGA 240
  241 VAGAVSRTGT APLDRLKVFM QVHASKTNRL NILGGLRSMV LEGGIRSLWR GNGINVLKIA 300
  301 PESAIKFMAY EQIKRAILGQ QETLHVQERF VAGSLAGATA QTIIYPMEVL KTRLTLRRTG 360
  361 QYKGLLDCAR RILEREGPRA FYRGYLPNVL GIIPYAGIDL AVYETLKNWW LQQYSHDSAD 420
  421 PGILVLLACG TISSTCGQIA SYPLALVRTR MQAQASIEGG PQLSMLGLLR HILSQEGMRG 480
  481 LYRGIAPNFM KVIPAVSISY VVYENMKQAL GVTSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	329	0.65
Transmembrane Helix	330	347	0.39
Cytoplasmic	348	380	0.76
Transmembrane Helix	381	402	0.73
Non-Cytoplasmic	403	422	0.89
Transmembrane Helix	423	445	0.78
Cytoplasmic	446	515	0.73