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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109123034
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTWGPGMV SVVGPMGLLV VLLIGGCAAE EPHKRVFQPK GXIRVEGPGT APHICNSTGR  60
   61 PFPRWFXWLC GSWRKHCERC QHRETIEFDE SAGAVLRIQP LRTPRDENVY ECVAQNSVGE 120
  121 ITVHAKLTVL RGIGLPRGYL ISDSGPMKLR LASQRRGFTM LARLVSNSSP QVILLPWPPT 180
  181 VSPQPPSPSN GRIKQLRSET FESTPIRGAL QIESSEETDQ GKYECVATNS AGVRYSSPAN 240
  241 LYVRELREVR RVAPRFSILP VSHEIMPGGN VNITCVAVGS PMPYVKWMQG AEDLTPEDDM 300
  301 PVGRNVLELT DVKDSANYTC VAMSSLGVIE AVAQITVKSL PKAPGTPVVT ENTATSITIT 360
  361 WDSGNPDPVS YYVIEYKSKS QDGPYQIKED ITTTRYSIGG LSPNSEYEIW VSAVNSIGQG 420
  421 PPSESVVTRT GEQAPASAPR NVQARMLSAT TMIVQWEEPV EPNGLIRGYR VYYTMEPEHP 480
  481 VGNWQKHNVD DSLLTTVGSL LEDETYTVRV LAFTSVGDGP LSDPIQVKTQ QGVPGQPMNL 540
  541 RAEARSETSI TLSWSPPRQE SIIKYELLFR EGDHGREVGR TFDPTTSYVV EDLKPNTEYA 600
  601 FRLAARSPQG LGAFTPVVRQ RTLQSKPSAP PQDVKCVSVR STAILVSWRP PPPETHNGAL 660
  661 VGYSVRYRPL GSEDPEPKEV NGIPPTTTQI LLEALEKWTQ YRITTVAHTE VGPGPESSPV 720
  721 VVRTDEDVPS APPRKVEAEA LNATAIRVLW RSPAPGRQHG QIRGYQVHYV RMEGAEARGP 780
  781 PRIKDVMLAD AQWETDDTAE YDVVVTRAPP PXQSYSSTVA RACNPSTLGG RGSMAMPRVL 840
  841 VSAXALLGRP TLSVQQTPEG SLLARWEPPA GTAEDQVLGY RLQFGREDST PLATLEFPPS 900
  901 EDRYTASGVH KGATYVFRLA ARSRGGLGEE AAEVLSIPED TPRGHPQILE AAGNASAGTV 960
  961 LLRWLPPVPA ERNGAIVKYT VAVREAGALG PARETELPAA AEPGAENALT LQGLKPDTAY1020
 1021 DLQVRAHTRR GPGPFSPPVR YRTFLRDQGR PPSLSPAQVS GHFSASSWSL KASPDPEAPA1080
 1081 LAKIQYNGLT LDVDGRTTKK LITHLKPHTF YNFVLTNRGS SLGGLQQTVT AWTAFNLLNG1140
 1141 KPSVAPKPDA DGFIMVYLPD GQSPVPVQSY FIVMVPLRKS RGGQFLTPLG SPEDMDLEEL1200
 1201 IQDISRLQRR SLRHSRQLEV PRPYIAARFS VLPPTFHPGD QKQYGGFDNR GLEPGHRYVL1260
 1261 FVLAVLQKSE PTFAASPFSD PFQLDNPDPQ PIVDGEEGLI WVIGPVLAVV FIICIVIAIL1320
 1321 LYKNKPDSKR KDSEPRTKCL LNNADLAPHH PKDPVEMRRI NFQTPDSGLR SPLREPGFHF1380
 1381 ESMLSHPPIP IADMAEHTER LKANDSLKLS QEYESIDPGQ QFTWEHSNLE VNKPKNRYAN1440
 1441 VIAYDHSRVI LQPIEGIVGS DYINANYVDG YRRQNAYIAT QGPLPETFGD FWRMVWEQRS1500
 1501 ATIVMMTRLE EKSRIKCDQY WPNRGTETYG FIQVTLLDTI ELATFCVRTF SLHKNGSSEK1560
 1561 REVRQFQFTA WPDHGVPEYP TPFLAFLRRV KTCNPPDAGP IVVHCSAGVG RTGCFIVIDA1620
 1621 MLERIKPEKT VDVYGHVTLM RSQRNYMVQT EDQYSFIHEA LLEAVGCGNT EVPARSLYAY1680
 1681 IQKLAQVEPG EHVTGMELEF KRLANSKAHT SRFISANLPC NKFKNRLVNI MPYESTRVCL1740
 1741 QPIRGVEGSD YINASFIDGY RQQKAYIATQ GPLAETTEDF WRMLWENNST IVVMLTKLRE1800
 1801 MGREKCHQYW PAERSARYQY FVVDPMAEYN MPQYILREFK VTDARDGQSR TVRQFQFTDW1860
 1861 PEQGVPKSGE GFIDFIGQVH KTKEQFGQDG PISVHCSAGV GRTGVFITLS IVLERMRYEG1920
 1921 VVDIFQTVKM LRTQRPAMVQ TEDEYQFCYQ AALEYLGSFD HYAT

YRC Informatics Platform - Version 3.0
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