YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109120693, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVFYGRL LAVATLRNHR PRTALGAAAQ VLGSSGLFNN HGLQVQQQQQ RNLSLHEYMS  60
   61 MELLQEAGVS IPKGCVAKSP DEAYAVAKKL GSKDVVIKAQ VLAGGRGKGT FESGLKGGVK 120
  121 IVFSPEEAKA VSSQMIGKKL FTKQTGEKGR ICNQVLVCER KYPRREYYFA ITMERSFQGP 180
  181 VLIGSSQGGV NIEDVAAETP EAIITEPIDI EEGIKKEQAL QLAQKMGFPP NIVESAAENM 240
  241 VKLYSLFLKY DATMIEINPM VEDSDGAVLC MDAKINFDSN SAYRQKKIFD LQDWTQEDER 300
  301 DKDAAQANLN YIGLDGNIGC LVNGAGLAMA TMDIIKLHGG TPANFLDVGG GATVHQVTEA 360
  361 FKLITSDKKV LAILVNIFGG IMRCDVIAQG IVTALKDLEI KIPVVVRLQX TRVDDAKALI 420
  421 AGSGLKILAC DDLDEAARMV VKLSEIVTLA KQAHVDVKFQ LPI

Type	Start	End	Confidence
Signal Peptide	1	26	0.45
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	463	0.98