YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109120162
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEDVWGDEQS DFTCNTQQPG  60
   61 CENVCYDRAF PISHIRFWAL QIIFVSTPTL IYLGHVLHMV RMEEKRKARQ EEEPPKTDSP 120
  121 SPPEPPQDRP SSREDRGRVR MAGALLRTYV FNIIFKTLLE VGFIAGQYFL YGFELQPLYR 180
  181 CDRWPCPNTV DCFISRPTEK TIFIIFMLAV ACASLLLNML EIYHLGWKKL KQGMTSLGPD 240
  241 ASEAPPGTAD PPPLPRSSRP AAALGFPPYY AHTAPAGQAR ALGYPGAPPP AADFKLLALT 300
  301 EARGRCPSAQ LYHGHHHLPL TEQNWAGRAA EQQRHELRAY PAAPTPAAPS PTGSSSQPPT 360
  361 HEAEAGAAHL LLDGSGSSLE GSALAGTPEE EEQAVTTAAQ MHQPPLLLGD PGRASKASRA 420
  421 SGGRARPEDL AI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	76	0.98
Transmembrane Helix	77	99	0.91
Cytoplasmic	100	147	0.95
Transmembrane Helix	148	169	0.86
Non-Cytoplasmic	170	201	0.93
Transmembrane Helix	202	225	0.89
Cytoplasmic	226	432	0.95