YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109116301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTERESPEP DCQKQFQAAV SVIQNLPKNG SYRPSYEEML RFYSYYKQAT MGPCLVPRPG  60
   61 FWDPIGRYKW DAWNSLGKMS REEAMSAYIT EMKLVAQKVI DTVPLGEVAE DMFGYFEPLY 120
  121 QVIPDMPRPP ETFLRRVAGW KEQVVNGDAG AVSEPPCLPK EPAPPSPESH PPRDLDSEVF 180
  181 CDSLEQLEPE LGWAEQQAAS GGKRDPRNSP VPPTEKEGST AGPQELDVWL LGTVRALQES 240
  241 MQEVQARVQS LESMPRPPEQ RPQPRPSARP WPLGLPGPTL LFFLLWPFVV QWLFRMFRTQ 300
  301 KR

Type	Start	End	Confidence
Non-Cytoplasmic	1	270	0.94
Transmembrane Helix	271	294	0.88
Cytoplasmic	295	302	0.89