YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109114982
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCHSESDDA DVKTVDQNLS FKATKADLRQ KLRLLTTDQG IYDTWLLLTS DKIHLKGTGA  60
   61 KVGIVTHQNS IIRSDHVTVQ LPTARPRRVR ERSPGKTTTP RSVGRAGQEP AEETTTPRRR 120
  121 RACRRGAVTS RGPARSADSA GAASGEAAAA GCYSCWSSSG PRSREPFPGP RYPAPHVERG 180
  181 SRMNVGTAHS EVNPNTRVMN SRGIWLSYVL AIGLLHVVLL SIPFVSVPVV WTLTNLIHNM 240
  241 GMYIFLHTVK GTPFETPDQG KARLLTHWEQ MDYGVQFTAS RKFLTITPIV LYFLTSFYTK 300
  301 YDQIHFVLNT VSLMSVLIPK LPQLHGVRIF GINKY

Type	Start	End	Confidence
Cytoplasmic	1	203	0.92
Transmembrane Helix	204	227	0.86
Non-Cytoplasmic	228	303	0.58
Transmembrane Helix	304	321	0.49
Cytoplasmic	322	335	0.58