YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109114899
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	105	0.98
Transmembrane Helix	106	125	0.93
Cytoplasmic	126	134	0.80
Transmembrane Helix	135	154	0.91
Non-Cytoplasmic	155	168	0.83
Transmembrane Helix	169	190	0.87
Cytoplasmic	191	195	0.92
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	224	0.77
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	255	0.80
Transmembrane Helix	256	274	0.89
Non-Cytoplasmic	275	283	0.71
Transmembrane Helix	284	302	0.85
Cytoplasmic	303	320	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRAARLVL LAGAAALASG SQGDREPVYR DCVLQCEEQN CSGGALNHFR SRQPIYMSLA  60
   61 GWTCRDDCKY ECMWVTVGLY LQEGHKVPQF HGKWPFSRFL FFQEPASAVA SFLNGLASLV 120
  121 MLCRYRTFVP ASSPMYHTCV AFAWVSLNAW FWSTVFHTRD TDLTEKMDYF CASTVILHSI 180
  181 YLCCVRTVGL QHPAVVSAFR ALLLLMLTVH VSYLSLIRFD YGYNLVANVA IGLVNVVWWL 240
  241 AWCLWNQQRL PHVRKCMVVV LLLQGLSLLE LLDFPPLFWV LDAHAIWHIS TIPVHVLFFS 300
  301 FLEDDSLYLL KESEAKFKLD