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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109114680
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQCWMWDVR AHHAVVRVGM SPVASACSVF SFGTRPSGIS LSVRARARLE AGAWSLHSPS  60
   61 AHLELQLSLL TEGTTRAPKH THTHTITSWG GNTGAAGNRR RRLITEEGAS ITGARRYPNS 120
  121 RTRYSALLNL GDVHFREIRT NSKKVPQDRL LPAAGKLRAG PGSAENSRFL PSLPVKAGVG 180
  181 RGSPRFPSAR PRPAPARVGP RRARPWLHSP APATWDPLLD LGSPSLPTRP PTGLAFQCLQ 240
  241 SLSRVQGPPG GAATGSWVGG QAGARARAAG PPGAGEGGRP LSSQGRVNAL HLGPACGCGS 300
  301 FPKAPGPGRP SPQALSAGQL GPHPPAAHLR SLKSLEPEDE VEDDPKVTLE AKELWDQFHK 360
  361 LGTEMVITKS GRRMFPPFKV RVSGLDKKAK YILLMDIVAA DDCRYKFHNS RWMVAGKADP 420
  421 EMPKRMYIHP DSPATGEQWM AKPVAFHKLK LTNNISDKHG FTILNSMHKY QPRFHIVRAN 480
  481 DILKLPYSTF RTYVFPETDF IAVTAYQNDK ITQLKIDNNP FAKGFRDTGN GRREKRKQLT 540
  541 LPSLRLYEEH CKPERDGAES DASSCDPPPA REPPTSPGAA PSPLRLHRAR AEEKSCAADS 600
  601 DPEPERLSDE RAGAPLGRSP APDSASPTRL TESERARERR SPERGKEPAE SGGDGPFGLR 660
  661 SLEKERAEAR RKDEGRKEAA EGKEPGLAPL VVQTDSASPL GAGHLPGLAF SSHLHGQQFF 720
  721 GPLGAGQPLF LHPGQFTMGP GAFSAMGMGH LLASVAGGGN GGGGGPGTAA GLDAGGLGPA 780
  781 ASAASTAAPF PFHLSQHMLA SQGIPMPTFG GLFPYPYTYM AAAAAAASAL PATSAAAAAA 840
  841 AAAGSLSRSP FLGSARPRLR FSPYQIPVTI PPSTSLLTTG LASEGSKAAG GNSREPSPLP 900
  901 ELALRKVGAP SRGALSPSGS AKEAANELQS IQRLVSGLES QRALSPGRES PK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle