YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109114064
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVDEDLSLG SALWGESAIQ IPGPSVSRVA VPRGGWVRLP RPALRLRGRG NAVPALRAFA  60
   61 FRKPVSLAAC RRPRRRRPLG RRRRSWCCTS SLAGKQLRGR HGGPRRPKRL AGGAVGWALP 120
  121 VRGVHSMRAG GGRPPRAADM KKDVRILLVG EPRVGKTSLI MSLVSEEFPE EVPPRAEEIT 180
  181 IPADVTPERV PTHIVDYSEA EQSDEQLHQE ISQANVICIV YAVNNKHSID KVTSRWIPLI 240
  241 NERTDKDSRL PLILVGNKSD LVEYSSMETI LPIMNQYTEI ETCVECSAKN LKNISELFYY 300
  301 AQKAVLHPTG PLYCPEEKEM KPACIKALTR IFKISDQDND GTLNDAELNF FQRICFNTPL 360
  361 APQALEDVKN VVRKHISDGV ADSGLTLKGF LFLHTLFIQR GRHETTWTVL RRFGYDDDLD 420
  421 LTPEYLFPLL KIPPDCTTEL NHHAYLFLQS TFDKHDLDRD CALSPDELKD LFKVFPYIPW 480
  481 GPDVNNTVCT NERGWITYQG FLSQWTLTTY LDVQRCLEYL GYLGYSILTE QESQASAITV 540
  541 TRDKKIDLQK KQTQRNVFRC NVIGVKNCGK SGVLQALLGR NLMRQKKIRE DHKSYYAINT 600
  601 VYVYGQEKYL LLHDISESEF LTEAEIICDV VCLVYDVSNP KSFEYCARIF KQHFMDSRIP 660
  661 CLIVAAKSDL HEVKQEYSIS PTDFCRKHKM PPPQAFTCNT ADAPSKDIFV KLTTMAMYPE 720
  721 DHYRDRLSRD MGHTDRIENL RKIWVFLKTA FHARLRCMCT CNRCTFCICQ NFLNSDLLQS 780
  781 VKNKIFTAVL NRHVTQADLK SSTFWLRASF GATVFAVLGF AMYKALLKQR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle