YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109113473
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSGDPGAK PTSSSVAGPD CCGGLGNIDF RQADLCVMTW LLGYVDPLDP SFVAAVLTIA  60
   61 FNPLYWNVVA RWEHKTRKLS RAFGSPYLAC YSLSVTILLL NFLRSHCFTQ AMLSQPKMES 120
  121 LDTPAAYSLG LALLGLGVVL VLSSFFALGF TGTFLGDYFG ILKEARVTVF PFNILDNPMY 180
  181 WGSTANYLGW AIMHASPTGL LLTVLVALTY MVALLYEEPF TAEIYRQKAS GPHKRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.56
Transmembrane Helix	48	69	0.76
Cytoplasmic	70	82	0.60
Transmembrane Helix	83	106	0.75
Non-Cytoplasmic	107	125	0.51
Transmembrane Helix	126	155	0.78
Cytoplasmic	156	166	0.41
Transmembrane Helix	167	181	0.26
Non-Cytoplasmic	182	189	0.57
Transmembrane Helix	190	216	0.80
Cytoplasmic	217	236	0.75