YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDS11096.1_1
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSGLQLLG FSMALLGWVG LVACTAIPQW QMSSYAGDNI ITAQAMYKGL WMDCVTQSTG  60
   61 MMSCKMYDSV LALPAAMQAT RALMVVSLVL GFLAMFVATM GMKCTRCGGD DKVKKARIAM 120
  121 GGGIIFIVAG LAALIACSWY GHQIVTDFYN PLIPTNIKYE FGPAIFIGWA GSALVILGGA 180
  181 LLSCSCPRNE SKAGYHAPRS YPKSNSSKEY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	30	0.88
Non-Cytoplasmic	31	78	0.95
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	117	0.92
Transmembrane Helix	118	142	0.88
Non-Cytoplasmic	143	163	0.91
Transmembrane Helix	164	184	0.94
Cytoplasmic	185	211	0.96