YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109112773
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNWLAIFI LFPLKLVEKC ESTVSLTVPP VVKLENGSST NVSIALRPPL NATLVITFEI  60
   61 TFRSKNITIL ELPEEVVVPP GVTNSSFQVT SQNVGQVTVY LHGNHSNQTG PRIRFLVIRS 120
  121 NAISIVNQVI GWIYFVAWSI SFYPQVIMNW RRKSVIGLSF DFVALNLTGF VAYSVFNIGL 180
  181 LWVPYIKEQF LLKYPNGVNP VNSNDVFFSL HAVVLTLIII VQCCLYERGG QRVSWPAVGF 240
  241 LVLAWLFALV TMIVAAVGVT TWLQFLFCFS YIKLAVTLVK YFPQAYMNFH YKSTEGWSIG 300
  301 NVLLDFTGGS FSLLQMFLQS YNNDQWTLIF GDPTKFGLGV FSIFFDVVFF IQHFCLYRKR 360
  361 PGLQAARTGS GSRLRQDWAP NLQLKALPQT TSVSASSLKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	123	0.81
Transmembrane Helix	124	147	0.74
Cytoplasmic	148	161	0.70
Transmembrane Helix	162	182	0.85
Non-Cytoplasmic	183	206	0.88
Transmembrane Helix	207	226	0.96
Cytoplasmic	227	234	0.85
Transmembrane Helix	235	256	0.91
Non-Cytoplasmic	257	261	0.68
Transmembrane Helix	262	282	0.84
Cytoplasmic	283	296	0.83
Transmembrane Helix	297	318	0.86
Non-Cytoplasmic	319	335	0.91
Transmembrane Helix	336	357	0.92
Cytoplasmic	358	400	0.99