YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109112346
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLDFQLLVN TQWRRSLGQP LAAGRAVGGP GAGTQLESEV EARARSGPDP GGLGGRTMDS  60
   61 RTEEYELNGG LPPGTPGSPD ASPARWGWRH GPINVNHYAN KKSAAESMLD IALLMANASQ 120
  121 LKAVVEQGPS FAFYVPLVVL ISISLALQIG VGVLLIFLVK YDLNNPAKHA KLDFLNNLAT 180
  181 GLVFIIVVVN IFITAFGVQK PLMDMAPQQ

Type	Start	End	Confidence
Cytoplasmic	1	131	0.58
Transmembrane Helix	132	159	0.84
Non-Cytoplasmic	160	173	0.40
Transmembrane Helix	174	198	0.85
Cytoplasmic	199	209	0.38