YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109112216
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFQPPRLS ERDQQEQTRA SQDLGELNYI MIKETSALAS RQPQAPAHNK HGDKKASLEG  60
   61 WAVTTVLAIT AFSSLYPASS ARFPASRRSA RRWRRCNLLR SSRIRVHPTP AASTMPPKFD 120
  121 PNEIKVVYLR CTGGEVGATS ALAPKIGPLG LSPKKVGDDI AKATGDWKGL RITVKLTIQN 180
  181 RQAQIEVVPS ASALIIKALK EPPRDRKKQK NIKHSGNITF DEIINIARQM RHRSLARELS 240
  241 GTIKEILGTA QSVGCNVDGR HPHDIIDDIN SGAVECPAS

Type	Start	End	Confidence
Cytoplasmic	1	59	0.54
Transmembrane Helix	60	78	0.65
Non-Cytoplasmic	79	279	0.86