YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109111428
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	58	0.90
Non-Cytoplasmic	59	133	0.96
Transmembrane Helix	134	158	0.83
Cytoplasmic	159	173	0.82
Transmembrane Helix	174	198	0.84
Non-Cytoplasmic	199	204	0.74
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	257	0.87
Non-Cytoplasmic	258	260	0.59
Transmembrane Helix	261	284	0.69
Cytoplasmic	285	497	0.76
Transmembrane Helix	498	521	0.88
Non-Cytoplasmic	522	533	0.78
Transmembrane Helix	534	556	0.85
Cytoplasmic	557	567	0.68
Transmembrane Helix	568	587	0.84
Non-Cytoplasmic	588	601	0.66
Transmembrane Helix	602	623	0.92
Cytoplasmic	624	630	0.79
Transmembrane Helix	631	650	0.95
Non-Cytoplasmic	651	661	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSTTIT FLEKWCLDES LSGCRRHYHV KKKLKLIRIL GLFMGLVAIS TVSFSISAFS  60
   61 ETDTQSTGEA SVVSGPRVAQ GYRQRTLLDL NDKIQDYTPQ QPIPKEGESE NSTDHAQGDY 120
  121 PKDIFSLEER RKGAIILHVI GMIYMFIALA IVCDEFFVPS LTVITEKLGI SDDVAGATFM 180
  181 AAGGSAPELF TSLIGVFIAH SNVGIGTIVG SAVFNILFVI GMCALFSREI LNLTWWPLFR 240
  241 DVSFYIVDLI MLIIFFLDNV IMWWESLLLL TAYFCYVVFM KFNVQVEKWV KQMINRNKVV 300
  301 KVTAPEAQAK PSAARDKDEP TLPAKPRLQR GGSSASLHNS LMRNSIFQLM IHTLDPLAEE 360
  361 LGSYGKLKYY DTMTEEGRFR EKASILHKIA KKKCHVDENE RQNGAANHVE KIELPTSNST 420
  421 DVEMTPSSDA SEPVQNGNLS HNIEGAEAQT ADDEEDQPLS LAWPSETRKQ VTFLIVFPIV 480
  481 FPLWITLPDV RKPSSRKFFP ITFFGSITWI AVFSYLMVWW AHQVGETIGI SEEIMGLTIL 540
  541 AAGTSIPDLI TSVIVARKGL GDMAVSSSVG SNIFDITVGL PLPWLLYTVI HRFQPVAVSS 600
  601 NGLFCAIVLL FIMLLFVILS IALCKWRMNK ILGFIMFGLY FVFLVVSVLL EDRILTCPVS 660
  661 I