YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109111240
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFREPLLGG SAAMPGASLQ RACRLLVAVC ALHLGVTLVY YLAGRDLSRL PQLVGVSTSL  60
   61 QGGSNGAAAI GQPSGELGTR GARPPPPLGA SSQPRPAGDS SPVAASGPGP ASNLTSVPVP 120
  121 QTTSLPLPAC PEESPLLVGP MLIEFNMPVD LELVAKQNPN VKMGGRYTPR DCVSPHKVAI 180
  181 IIPFRNRQEH LKYWLYYLHP ILQRQQLDYG IYVINQAGDT MFNRAKLLNV GFREALKDYD 240
  241 YTCFVFSDVD LIPMNDRNAY RCFSQPRHIS VAMDKFGFSL PYVQYFGGVS ALSKQQFLTI 300
  301 NGFPNNYWGW GGEDDDIFNR LVFRGMSISR PNAVVGRCRM IRHSRDKKNE PNPQRFDRIA 360
  361 HTKETMLSDG LNSLTYQVLD VQRYPLYTQI TVDIGTPS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.76
Transmembrane Helix	21	43	0.74
Non-Cytoplasmic	44	398	0.99