YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109111122, gi...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.49
Transmembrane Helix	8	28	0.57
Non-Cytoplasmic	29	320	0.91
Transmembrane Helix	321	340	0.62
Cytoplasmic	341	447	0.76
Transmembrane Helix	448	473	0.85
Non-Cytoplasmic	474	481	0.69
Transmembrane Helix	482	503	0.92
Cytoplasmic	504	509	0.69
Transmembrane Helix	510	531	0.92
Non-Cytoplasmic	532	538	0.74
Transmembrane Helix	539	560	0.91
Cytoplasmic	561	571	0.65
Transmembrane Helix	572	590	0.93
Non-Cytoplasmic	591	618	0.74
Transmembrane Helix	619	637	0.73
Cytoplasmic	638	667	0.86
Transmembrane Helix	668	689	0.93
Non-Cytoplasmic	690	701	0.85
Transmembrane Helix	702	722	0.93
Cytoplasmic	723	740	0.75
Transmembrane Helix	741	760	0.90
Non-Cytoplasmic	761	827	0.88
Transmembrane Helix	828	850	0.89
Cytoplasmic	851	856	0.80
Transmembrane Helix	857	879	0.90
Non-Cytoplasmic	880	886	0.75
Transmembrane Helix	887	907	0.57
Cytoplasmic	908	913	0.48
Transmembrane Helix	914	937	0.57
Non-Cytoplasmic	938	942	0.66
Transmembrane Helix	943	964	0.88
Cytoplasmic	965	1011	0.78
Transmembrane Helix	1012	1034	0.87
Non-Cytoplasmic	1035	1047	0.70
Transmembrane Helix	1048	1072	0.86
Cytoplasmic	1073	1089	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKASVLLFL AWVCFVFYAG IALFTSGFLL TRLELTNYSS CQEPPGPGSL PWGSQGKPGA  60
   61 CWMASRFSRV VLVLVDALRF DFAQPQHSHV PGEPPVSLPF LGKLSSLQRI LEIQPHHARL 120
  121 YRSQVDPPTT TMQRLKALTT GSLPTFIDAG SNFASHAIVE DNLIKQLTSA GRRVVFMGDD 180
  181 TWKDLFPGAF SKAFFFPSFN VRDLDTVDNG ILEQLYPTMD SGEWDVLIAH FLGVDHCGHK 240
  241 HGPHHPEMAK KLSQMDQVIQ GLVERLENDT LLVVAGDHGM TTNGDHGGDS ELEVSAALFL 300
  301 YSPTALFPST PPEEPEVIPQ VSLVPTLALL LGLPIPFGNI GEVMAELFSG GEDSQPHSSA 360
  361 LAQASALHLN AQQVSRFLRT YSAATQDLQA KELHQLQNLF SKASADYQWL LQSPNGAEAT 420
  421 LPTVIAELQQ FLRGARAMCI ESWARFSLVR MAGGAALLVA ACFICLLASQ WAISPDFPFR 480
  481 PLLLIPVAWG LVGTIAYAGL LGIIELKLDL VLLGAVAAVS SFLPFLWKAW AGWGSKRPLA 540
  541 TLFPIPGPVL LLLLFRLAVF FSDSFVVAEA RATPFLLGSF ILLLVVQLHW EGQLLPPKLL 600
  601 TMPRLGTSAT TNPPRHSGAY ALRLGIGLLL CTRLAGLFHR CPEETPACHS SPWLSPLASM 660
  661 VGGRAKNLWY GACVAALLAL LAAVRLWLCH YGNLKSPEPP MLFVRWGLPL MALGTAAYWA 720
  721 LASGADEAPP RLRALVSGAS MVLPRAVAGL AASGLALLLW KPVTVLVKAG AGAPRTRTVL 780
  781 TPFSGPPTSQ ADLDYVVPQI YRHMQEEFRG RLERTKSQGP LTVAAYQLGS VYSAAMVTAL 840
  841 TLLAFPLLLL HAERISLVFL LLFLQSFLLL HLLAAGIPIT TPGPFTVPWR AVSAWALMAT 900
  901 QTFYSTGHQP VFPAIHWHAA FVGFPEGHGS CTWLPALLVG ANTFASHLLF AVGCPLLLLW 960
  961 PFLCESQGLR KRQQPPGNEA EARVRPEEEE EPLMEMRLRD APHHFYAALL QLGLKYLFIL1020
 1021 GVQILACALA ASILRRHLMV WKVFAPKFIF EAVGFIVSSV GLLLGIALVM RVDGAVSSWF1080
 1081 RQLFLAQQR