YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109110536
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSHHMGMS YMDSNSTMQP SHHHPATSAS HSHGGGDSHM MMMPMTFYFG FKNVELLFSG  60
   61 LVINTAGEMA GAFVAVFLLA MFYEGLKIAR ESLLRKSQVS IRYNSMPVPG PNGTILMETH 120
  121 KTVGQQMLSF PHLLQTVLHI IQVVISYFLM LIFMTYNGYL CIAVAAGAGT GYFLFSWKKA 180
  181 VVVDITEHCH

Type	Start	End	Confidence
Cytoplasmic	1	34	0.65
Transmembrane Helix	35	51	0.42
Non-Cytoplasmic	52	56	0.54
Transmembrane Helix	57	86	0.74
Cytoplasmic	87	131	0.78
Transmembrane Helix	132	151	0.75
Non-Cytoplasmic	152	155	0.45
Transmembrane Helix	156	176	0.82
Cytoplasmic	177	190	0.69