YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109105937
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPSRLPEA GFKSRKRPRA QPEVLRAYKK ASRRQPAVGI RGSVFCISQE PRELQLRRLV  60
   61 ARGGFRRSRP HFVPLWLGEC MIRMASGWFY LSCLLLGSLG SMCILFTIYW MQYWRGGFAW 120
  121 NGSIYMFNWH PVLMVAGMVV FYGGASLVYR LPQSWVGPKL PWKLLHAALH LMAFILTVVG 180
  181 LVAVFTFHNH GKIANLYSLH SWLGITAVFL FACQWCLGFA VFLLPWASMW LRSLLKPIHV 240
  241 FFGAAILSLS IASVISGINE KLFFSLKNTT RPYNSLPSEA VFANSTGMLV VAFGLLVLYI 300
  301 LLASSWKRPE PGILTDRQPL LHDGE

Type	Start	End	Confidence
Cytoplasmic	1	87	0.99
Transmembrane Helix	88	110	0.95
Non-Cytoplasmic	111	128	0.90
Transmembrane Helix	129	149	0.93
Cytoplasmic	150	166	0.84
Transmembrane Helix	167	187	0.94
Non-Cytoplasmic	188	202	0.86
Transmembrane Helix	203	226	0.89
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	258	0.94
Non-Cytoplasmic	259	279	0.95
Transmembrane Helix	280	303	0.89
Cytoplasmic	304	325	0.97