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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109105918
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRDPEAASP GKRGPGGLGR PAPAGRTAAA PDTVSEPQPG AAVHSEPHEL PQGSSQPRGR  60
   61 GLERQRLGPR SPAQPKDNVC GGARSRCPCG SRAVPSETPA APSTGASGVP ALADPRAKGL 120
  121 ESSAIPGVLA APNSSLTHSL NAPLWLQLGP VLPTLVAAAG PTSACGWLAS LGRGSQAVPE 180
  181 SASFLEKRAL IRTDLLAAMT YLCLLLLPFA QKGTGPTKSL PPFFQFCGVL CSSTSIPCPD 240
  241 RTLTQAVSVA GAATQYLHNP PAFSPRQPGR SQTDWSVRVS GNAASSERQI APGAVRGRRG 300
  301 PENRLPLLPR RPRPPLGTVW SDLYLSSPGA PSRDVLLVSA IITVSLSVTV VLCGLCHWCQ 360
  361 RKLGTRTPRE PDSGQGRGEE RTLSSPVLEL LFYSERVDTS QVRGSGLPPA ACLLSVNPSC 420
  421 PRPPACPLLG TLLSGAKVAA AAGLAVEREG RLGEKPAPVP PPGEDALRSS GAAPSEPGSS 480
  481 GKAGRGRWRT VQSHLAAGKL NLSNFEDSTL STATTLESIP SSTGEPKCQR PRTLMRQQSL 540
  541 QQPLSQHQRG RQPSQPTTSQ SLGQLQAHMA SAPGPNPRAY GRGQARQGTS AGSKYRAAGG 600
  601 RSRSNPGSWD HVVGQIRNRG LDMKSFLQGF LVVLVFLMGT GEQGGARVPN PAHFPAQSHL 660
  661 DSPAPRLPAG GKAVNTAPVP GQTPHDESDR RTEPRSSVSD LVNSLTSEML MLSPGSEEDE 720
  721 AHEGCSRENL GRIQFSVGYN FQESTLTVKI MKAQELPAKD FSGTSDPFVK IYLLPDKKHK 780
  781 LETKVKRKNL NPHWNETFLF EGFPYEKVVQ RILYLQVLDY DRFSRNDPIG EVSIPLNKVD 840
  841 LTQMQTFWKD LKPCSDGSGS RGELLLSLCY NPSANSIIVN IIKARNLKAM DIGGTSDPYV 900
  901 KVWLMYKDKR VEKKKTVTMK RNLNPIFNES FAFDIPTEKL RETTIIITVM DKDRLSRNDV 960
  961 IGKIYLSWKS GPGEVKHWKD MIARPRQPVA QWHQLKA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle