YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109109328
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	135	0.92
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	199	0.89
Transmembrane Helix	200	222	0.87
Cytoplasmic	223	233	0.68
Transmembrane Helix	234	253	0.94
Non-Cytoplasmic	254	259	0.80
Transmembrane Helix	260	278	0.93
Cytoplasmic	279	288	0.64
Transmembrane Helix	289	306	0.74
Non-Cytoplasmic	307	327	0.65
Transmembrane Helix	328	347	0.88
Cytoplasmic	348	354	0.83
Transmembrane Helix	355	376	0.92
Non-Cytoplasmic	377	385	0.74
Transmembrane Helix	386	405	0.92
Cytoplasmic	406	415	0.93
Transmembrane Helix	416	439	0.88
Non-Cytoplasmic	440	479	0.93
Transmembrane Helix	480	499	0.90
Cytoplasmic	500	506	0.74
Transmembrane Helix	507	527	0.72
Non-Cytoplasmic	528	528	0.31
Transmembrane Helix	529	552	0.70
Cytoplasmic	553	574	0.54
Transmembrane Helix	575	597	0.81
Non-Cytoplasmic	598	824	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVSGPLLS TATPRGSADR HVTPRPSTKL LGARSCRALD SYAPAYDSSA GARRHASRLL  60
   61 SDSCNDQLKT GIAVRFTPPS LTDSSQILSL SRSVELAWSQ PTGERRPADR RVWPPIHVKM 120
  121 TKFGFLRLSY EKQDTLLKLL ILSMAAVLSF STRLFAVLRF ESVIHEFDPY FNYRTTRFLA 180
  181 EEGFYKFHNW FDDRAWYPLG RIIGGTIYPG LMITSAAIYH VLHFFHITID IRNVCVFLAP 240
  241 LFSSFTTIVT YHLTKELKDA GAGLLAAAMI AVVPGYISRS VAGSYDNEGI AIFCMLLTYY 300
  301 MWIKAVKTGS ICWAAKCALA YFYMVSSWGG YVFLINLIPL HVLVLMLTGR FSHRIYVAYC 360
  361 TVYCLGTILS MQISFVGFQP VLSSEHMAAF GVFGLCQIHA FVDYLRSKLN PQQFEVLFRS 420
  421 VISLVGFVLL TVGALLMLTG KISPWTGRFY SLLDPSYAKN NIPIIASVSE HQPTTWSSYY 480
  481 FDLQLLVFMF PVGLYYCFSN LSDARIFIIM YGVTSMYFSA VMVRLMLVLA PVMCILSGIG 540
  541 VSQVLSTYMK NLDISRPDKK SKKQQDSTYP IKNEVASGMI LVMAFFLITY TFHSTWVTSE 600
  601 AYSSPSIVLS ARGGDGSRII FDDFREAYYW LRHNTPEDAK VMSWWDYGYQ ITAMANRTIL 660
  661 VDNNTWNNTH ISRVGQAMAS TEEKAYEIMR ELDVSYVLVI FGGLTGYSSD DINKFLWMVR 720
  721 IGGSTDTGKH IKENDYYTPT GEFRVDREGS PVLLNCLMYK MCYYRFGQVY TEAKRPPGFD 780
  781 RVRNAEIGNK DFELDVLEEA YTTEHWLVRI YKVKDLDNRG LSRT